Wall clock time and date at job start Sun Mar 29 2020 22:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48502 * 109.47442 * 29.99705 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46983 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99566 * 180.02562 * 11 10 9 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99795 * 180.02562 * 12 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 12 11 16 16 C 1.33384 * 125.20349 * 89.99907 * 15 14 12 17 17 C 1.38424 * 114.92035 * 179.97438 * 16 15 14 18 18 C 1.33386 * 114.92099 * 359.97438 * 17 16 15 19 19 S 1.75881 * 125.19973 * 269.69178 * 15 14 12 20 20 H 0.97006 * 119.99550 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 22 22 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 23 23 H 1.09001 * 109.46832 * 60.00036 * 10 9 7 24 24 H 1.09002 * 109.47153 * 300.00227 * 10 9 7 25 25 H 0.96995 * 120.00423 * 359.97438 * 11 10 9 26 26 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 27 27 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 28 28 H 1.08005 * 122.54108 * 359.95242 * 16 15 14 29 29 H 1.08005 * 122.53921 * 180.02562 * 17 16 15 30 30 H 1.08002 * 125.20183 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0001 11 7 5.4866 -2.6365 0.0001 12 6 6.1604 -3.8038 -0.0003 13 8 5.5540 -4.8541 -0.0002 14 6 7.6674 -3.8038 0.0003 15 6 8.1698 -5.2246 0.0003 16 6 8.4265 -5.9494 -1.0895 17 6 8.8809 -7.2334 -0.8424 18 6 8.9937 -7.5510 0.4481 19 16 8.5144 -6.1781 1.4375 20 1 -0.4850 0.8401 -0.0004 21 1 3.8752 -0.6797 0.8895 22 1 3.8746 -0.6808 -0.8905 23 1 3.6579 -3.1506 -0.8897 24 1 3.6586 -3.1502 0.8903 25 1 5.9716 -1.7965 -0.0003 26 1 8.0311 -3.2894 -0.8892 27 1 8.0304 -3.2904 0.8908 28 1 8.2898 -5.5639 -2.0891 29 1 9.1264 -7.9253 -1.6346 30 1 9.3315 -8.5041 0.8275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137840.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:00 Heat of formation + Delta-G solvation = -38.477324 kcal Electronic energy + Delta-G solvation = -13943.714363 eV Core-core repulsion = 11443.337195 eV Total energy + Delta-G solvation = -2500.377167 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.75300 -38.55621 -36.61506 -34.79153 -33.31891 -31.83195 -28.35929 -26.49900 -24.19007 -22.64414 -21.61256 -20.12820 -19.00557 -18.24573 -17.92026 -16.74983 -16.51224 -16.24198 -16.08043 -15.19256 -14.94010 -14.53782 -13.92392 -13.73413 -13.51739 -13.33924 -13.25830 -13.02864 -12.43684 -12.18440 -12.14572 -11.75545 -11.64829 -11.52233 -10.93804 -10.78786 -10.03893 -9.56184 -9.34838 -8.30138 -6.37816 0.07967 0.75831 1.12215 1.39689 1.42699 1.53931 1.66732 1.83079 2.37301 2.40443 3.05047 3.64922 4.02948 4.22931 4.28069 4.39133 4.42816 4.54201 4.72582 4.75043 4.76937 5.16284 5.22529 5.39644 5.40827 5.43988 5.61375 5.65102 6.21977 6.62860 6.71508 7.26807 7.32006 8.86834 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.062568 B = 0.004072 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.405668 B = 6874.919131 C = 6987.040890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.235 1.235 7 C -0.541 4.541 8 H 0.026 0.974 9 C -0.012 4.012 10 C 0.145 3.855 11 N -0.716 5.716 12 C 0.504 3.496 13 O -0.584 6.584 14 C -0.062 4.062 15 C -0.173 4.173 16 C -0.140 4.140 17 C -0.144 4.144 18 C -0.216 4.216 19 S 0.079 5.921 20 H 0.268 0.732 21 H 0.038 0.962 22 H 0.037 0.963 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.416 0.584 26 H 0.145 0.855 27 H 0.129 0.871 28 H 0.149 0.851 29 H 0.161 0.839 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.055 -7.202 -0.168 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.158 1.158 7 C -0.580 4.580 8 H 0.044 0.956 9 C -0.050 4.050 10 C 0.021 3.979 11 N -0.368 5.368 12 C 0.291 3.709 13 O -0.464 6.464 14 C -0.104 4.104 15 C -0.291 4.291 16 C -0.171 4.171 17 C -0.174 4.174 18 C -0.351 4.351 19 S 0.343 5.657 20 H 0.077 0.923 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.253 0.747 26 H 0.163 0.837 27 H 0.147 0.853 28 H 0.167 0.833 29 H 0.178 0.822 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 23.392 -7.593 1.402 24.634 hybrid contribution -0.460 0.471 -1.471 1.612 sum 22.933 -7.122 -0.070 24.013 Atomic orbital electron populations 1.70089 1.08674 1.28462 1.51974 1.26122 0.95708 1.04001 0.93607 0.85507 0.79688 0.77099 0.79379 1.18904 1.21342 1.15759 1.21281 0.91766 0.93293 1.51644 0.95576 1.19648 0.94273 0.92887 0.98182 1.20993 0.78886 0.98363 0.99685 1.46042 1.07162 1.09183 1.74411 1.21240 0.91156 0.83185 0.75342 1.90703 1.71577 1.32988 1.51153 1.20250 0.89153 0.92616 1.08339 1.24051 1.08439 1.00319 0.96253 1.20395 1.02244 0.94692 0.99738 1.20436 1.02748 0.97063 0.97174 1.25914 1.09314 1.03219 0.96686 1.84242 1.64296 1.06739 1.10451 0.92326 0.94363 0.94425 0.94041 0.94185 0.74672 0.83721 0.85304 0.83338 0.82187 0.79733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 2 C 0.00 0.15 5.47 84.65 0.46 0.61 16 3 Si 0.96 41.90 27.47 68.60 1.88 43.79 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.23 -8.99 6.54 99.48 0.65 -8.34 16 7 C -0.54 -30.98 9.66 25.60 0.25 -30.74 16 8 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 9 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 10 C 0.14 5.88 5.61 86.38 0.48 6.37 16 11 N -0.72 -21.37 5.56 -463.06 -2.57 -23.95 16 12 C 0.50 15.23 7.82 87.66 0.69 15.91 16 13 O -0.58 -23.74 16.03 -3.03 -0.05 -23.79 16 14 C -0.06 -1.21 6.19 29.10 0.18 -1.03 16 15 C -0.17 -3.97 5.00 24.59 0.12 -3.85 16 16 C -0.14 -3.04 10.05 21.22 0.21 -2.83 16 17 C -0.14 -2.79 10.18 21.22 0.22 -2.58 16 18 C -0.22 -4.13 11.23 66.72 0.75 -3.39 16 19 S 0.08 1.76 23.33 -56.49 -1.32 0.44 16 20 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 21 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 22 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 23 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 25 H 0.42 9.10 8.47 -92.71 -0.79 8.31 16 26 H 0.15 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -74.67 278.76 2.03 -72.64 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.30 Total: 12.01 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 3.49 Total: -21.92 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -2.27 Total: -83.16 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.88 Total: 43.79 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.32 Total: 0.44 kcal Total: -74.67 2.03 -72.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137840.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.159 kcal (2) G-P(sol) polarization free energy of solvation -74.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds