Wall clock time and date at job start Sun Mar 29 2020 22:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99879 * 2 1 4 4 H 1.48500 * 109.47029 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47255 * 299.99764 * 3 2 1 6 6 H 1.48495 * 109.47316 * 59.99951 * 3 2 1 7 7 C 1.37873 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99817 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46913 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.46985 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99630 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00315 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.99429 * 179.97438 * 12 11 10 15 15 C 1.50703 * 109.46698 * 180.02562 * 14 12 11 16 16 C 1.38425 * 122.53762 * 90.00158 * 15 14 12 17 17 C 1.33390 * 114.92123 * 179.97438 * 16 15 14 18 18 S 1.75891 * 109.59251 * 0.02562 * 17 16 15 19 19 C 1.33383 * 122.54063 * 269.97431 * 15 14 12 20 20 H 0.97003 * 120.00286 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47142 * 60.00260 * 9 7 2 22 22 H 1.09003 * 109.47386 * 299.99910 * 9 7 2 23 23 H 1.08999 * 109.47326 * 59.99979 * 10 9 7 24 24 H 1.08998 * 109.46785 * 299.99456 * 10 9 7 25 25 H 0.97000 * 120.00041 * 359.97438 * 11 10 9 26 26 H 1.08999 * 109.47203 * 60.00330 * 14 12 11 27 27 H 1.09003 * 109.47454 * 299.99901 * 14 12 11 28 28 H 1.07997 * 122.54292 * 359.71157 * 16 15 14 29 29 H 1.08003 * 125.20243 * 179.97438 * 17 16 15 30 30 H 1.08000 * 125.20529 * 0.06732 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 2.1867 -6.0979 -0.0018 13 8 3.3995 -6.0979 -0.0014 14 6 1.4331 -7.4031 -0.0018 15 6 2.4124 -8.5485 -0.0020 16 6 2.8963 -9.1145 1.1650 17 6 3.7551 -10.1197 0.9881 18 16 3.9924 -10.3968 -0.7326 19 6 2.8783 -9.0941 -1.1265 20 1 -0.4851 0.8400 0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.8719 -3.6043 0.8894 24 1 2.8718 -3.6043 -0.8906 25 1 0.5427 -4.9308 -0.0011 26 1 0.8061 -7.4606 -0.8916 27 1 0.8068 -7.4611 0.8884 28 1 2.6041 -8.7657 2.1444 29 1 4.2324 -10.6775 1.7802 30 1 2.6129 -8.7827 -2.1260 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137897.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:11 Heat of formation + Delta-G solvation = -19.642052 kcal Electronic energy + Delta-G solvation = -13940.158275 eV Core-core repulsion = 11440.597867 eV Total energy + Delta-G solvation = -2499.560408 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.56054 -37.66178 -34.79443 -32.85437 -31.34938 -29.62428 -27.86764 -24.75530 -23.17146 -21.04831 -20.22613 -18.72353 -17.63714 -16.79789 -16.25725 -15.64434 -15.01876 -14.62031 -14.44283 -13.49776 -13.39688 -13.06621 -12.66573 -12.52035 -12.34087 -12.13593 -11.64597 -11.19992 -11.04685 -10.83398 -10.62639 -10.33329 -9.79447 -9.48100 -9.20531 -8.79625 -8.54013 -8.38156 -8.34873 -6.10299 -4.12993 1.00052 1.64529 1.94849 2.64942 3.03981 3.27881 3.35486 3.40656 3.85038 4.41991 4.78585 4.90322 5.21590 5.26314 5.26909 5.39304 5.49126 5.61858 5.99362 6.31942 6.34992 6.38203 6.44757 6.74212 6.93742 7.51488 7.61134 7.88282 8.03618 8.27615 8.68908 8.93415 9.52016 11.01341 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.070132 B = 0.003707 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.152404 B = 7551.924965 C = 7690.031099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.122 3.878 11 N -0.724 5.724 12 C 0.505 3.495 13 O -0.543 6.543 14 C -0.085 4.085 15 C -0.079 4.079 16 C -0.118 4.118 17 C -0.215 4.215 18 S 0.083 5.917 19 C -0.199 4.199 20 H 0.261 0.739 21 H 0.022 0.978 22 H 0.022 0.978 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.398 0.602 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.139 0.861 29 H 0.162 0.838 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 -19.502 0.081 19.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.375 5.375 12 C 0.290 3.710 13 O -0.420 6.420 14 C -0.128 4.128 15 C -0.091 4.091 16 C -0.149 4.149 17 C -0.350 4.350 18 S 0.347 5.653 19 C -0.334 4.334 20 H 0.071 0.929 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.231 0.769 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.157 0.843 29 H 0.180 0.820 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.229 -20.398 -0.771 20.666 hybrid contribution -0.904 2.024 0.836 2.369 sum 2.324 -18.374 0.065 18.520 Atomic orbital electron populations 1.69962 1.06089 1.26769 1.50512 1.24998 0.94895 0.99428 0.94994 0.86460 0.80186 0.83329 0.77623 1.19577 1.20926 1.20919 1.21099 0.93293 0.90411 1.51173 0.92216 1.19331 0.94213 0.91164 0.97831 1.21705 0.96028 0.81593 1.00706 1.46338 1.10490 1.06520 1.74118 1.20448 0.88338 0.85251 0.76972 1.90692 1.13966 1.87704 1.49657 1.20420 0.97022 0.90257 1.05090 1.18380 1.00535 0.97882 0.92327 1.20045 0.98849 0.96670 0.99326 1.25485 1.05901 1.04809 0.98797 1.84114 1.45515 1.34562 1.01156 1.25383 1.03653 1.02025 1.02338 0.92899 0.95936 0.95937 0.92655 0.92677 0.76902 0.88129 0.88021 0.84344 0.82012 0.82027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.60 5.61 -4.03 -0.02 2.58 16 11 N -0.72 -12.38 5.56 -60.29 -0.33 -12.71 16 12 C 0.51 8.40 7.82 -10.98 -0.09 8.31 16 13 O -0.54 -11.34 16.03 5.56 0.09 -11.25 16 14 C -0.09 -1.00 5.96 -29.03 -0.17 -1.17 16 15 C -0.08 -1.00 4.29 -106.25 -0.46 -1.45 16 16 C -0.12 -1.42 9.98 -41.21 -0.41 -1.83 16 17 C -0.21 -2.33 11.23 29.04 0.33 -2.00 16 18 S 0.08 0.90 23.34 -107.50 -2.51 -1.61 16 19 C -0.20 -2.39 10.98 29.04 0.32 -2.08 16 20 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 21 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.40 5.72 8.47 -40.82 -0.35 5.38 16 26 H 0.10 0.95 8.12 -51.93 -0.42 0.52 16 27 H 0.10 0.95 8.13 -51.93 -0.42 0.53 16 28 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 282.11 15.07 4.25 4.25 Total: -1.00 -32.36 282.11 -7.54 -39.90 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -3.69 Total: 1.14 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.06 Total: -10.74 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.40 Total: -38.05 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.61 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.36 -7.54 -39.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137897.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.255 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds