Wall clock time and date at job start Sun Mar 29 2020 22:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46986 * 119.99876 * 9 7 5 12 12 H 1.48494 * 109.47457 * 240.00237 * 9 7 5 13 13 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 14 14 C 1.34777 * 120.00033 * 275.00400 * 13 3 2 15 15 O 1.21702 * 119.99699 * 359.97438 * 14 13 3 16 16 C 1.46576 * 120.00011 * 179.97438 * 14 13 3 17 17 C 1.36647 * 125.46147 * 180.02562 * 16 14 13 18 18 C 1.37464 * 113.30278 * 179.97438 * 17 16 14 19 19 C 1.33825 * 115.10018 * 359.97438 * 18 17 16 20 20 S 1.70615 * 110.95180 * 359.72357 * 19 18 17 21 21 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 22 22 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 23 23 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 25 25 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 26 26 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 27 27 H 0.97000 * 119.99812 * 94.99561 * 13 3 2 28 28 H 1.08004 * 123.34740 * 359.97193 * 17 16 14 29 29 H 1.07999 * 122.45314 * 180.02562 * 18 17 16 30 30 H 1.07999 * 124.52070 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8811 -1.3816 10 1 6.5988 1.5461 -0.1940 11 1 6.4971 -0.5176 -1.4627 12 1 6.3992 1.6165 -2.6099 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3419 2.6326 0.4308 16 6 0.0471 3.3193 2.6195 17 6 -1.1536 3.9266 2.8578 18 6 -1.2518 4.4607 4.1206 19 6 -0.1703 4.2972 4.8917 20 16 1.0486 3.4413 4.0596 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.8295 -0.0613 -2.9496 27 1 2.2719 2.1231 1.9978 28 1 -1.9466 3.9815 2.1266 29 1 -2.1372 4.9740 4.4655 30 1 -0.0829 4.6548 5.9071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177560.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:15 Heat of formation + Delta-G solvation = -13.298172 kcal Electronic energy + Delta-G solvation = -14779.485084 eV Core-core repulsion = 12280.199767 eV Total energy + Delta-G solvation = -2499.285317 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.15692 -37.32148 -34.99919 -32.43287 -31.12044 -29.41109 -27.01856 -24.71752 -23.01770 -21.22098 -19.50389 -19.07586 -18.30422 -16.35970 -15.67910 -15.29427 -14.80475 -14.61658 -14.03443 -13.16742 -12.90493 -12.75292 -12.59970 -12.21299 -11.91378 -11.51687 -11.26274 -10.97783 -10.85341 -10.83159 -10.32068 -10.19342 -9.64342 -9.22158 -9.04927 -8.72175 -8.52165 -8.50964 -7.86175 -6.13458 -4.22899 0.71445 1.61835 2.01989 2.58910 3.23538 3.31463 3.34193 3.84731 4.03967 4.37349 4.99636 5.18130 5.35152 5.51806 5.56485 6.05457 6.29969 6.39598 6.42962 6.46607 6.66070 7.04486 7.18971 7.33871 7.40319 7.60768 7.71123 7.88233 8.16147 8.59867 8.74999 9.04369 9.44162 10.92038 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.034174 B = 0.006757 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.144064 B = 4142.918878 C = 4699.815715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.701 5.701 14 C 0.572 3.428 15 O -0.536 6.536 16 C -0.241 4.241 17 C -0.077 4.077 18 C -0.146 4.146 19 C -0.248 4.248 20 S 0.196 5.804 21 H 0.038 0.962 22 H 0.050 0.950 23 H 0.024 0.976 24 H 0.101 0.899 25 H 0.032 0.968 26 H 0.264 0.736 27 H 0.386 0.614 28 H 0.151 0.849 29 H 0.140 0.860 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 5.150 12.499 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.348 5.348 14 C 0.356 3.644 15 O -0.416 6.416 16 C -0.362 4.362 17 C -0.109 4.109 18 C -0.178 4.178 19 C -0.385 4.385 20 S 0.462 5.538 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.119 0.881 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.218 0.782 28 H 0.169 0.831 29 H 0.158 0.842 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.727 4.519 12.007 13.360 hybrid contribution -0.245 0.546 0.056 0.601 sum -3.972 5.065 12.063 13.673 Atomic orbital electron populations 1.21853 0.98316 0.98157 1.01274 1.21944 0.92668 0.99641 1.02412 1.18866 0.94419 0.89268 0.80604 0.93011 1.21257 0.90568 1.39077 1.06398 0.91984 1.24881 0.98679 0.94738 0.95331 1.69903 1.35078 1.37584 1.09335 0.86391 0.84772 0.77794 0.78150 1.19706 1.20841 1.20851 1.46455 1.14000 1.55648 1.18716 1.16961 0.83122 0.79010 0.85337 1.90797 1.51609 1.60227 1.38952 1.25158 1.00150 1.11248 0.99667 1.20768 0.96745 0.96474 0.96942 1.20007 0.99787 1.04112 0.93917 1.25246 0.99569 1.08293 1.05435 1.83111 1.17045 1.50154 1.03498 0.94302 0.93076 0.95725 0.88113 0.94943 0.92571 0.78180 0.83111 0.84208 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.85 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.61 11.29 55.43 0.63 -23.98 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.70 -15.05 5.02 -56.27 -0.28 -15.33 16 14 C 0.57 11.95 6.35 -12.90 -0.08 11.87 16 15 O -0.54 -12.85 13.97 5.19 0.07 -12.77 16 16 C -0.24 -4.03 6.45 -36.80 -0.24 -4.27 16 17 C -0.08 -1.12 10.01 -40.44 -0.40 -1.53 16 18 C -0.15 -1.71 10.15 -41.41 -0.42 -2.13 16 19 C -0.25 -2.72 10.92 29.18 0.32 -2.40 16 20 S 0.20 2.51 22.16 -107.50 -2.38 0.13 16 21 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 22 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.39 7.36 7.65 -40.82 -0.31 7.05 16 28 H 0.15 2.16 8.06 -52.48 -0.42 1.74 16 29 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 268.57 15.07 4.05 4.05 Total: -1.00 -29.58 268.57 -7.51 -37.10 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -3.37 Total: 5.91 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -1.20 Total: -10.61 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.34 Total: -39.32 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.07 Total: -12.77 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.38 Total: 0.13 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.58 -7.51 -37.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177560.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.800 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds