Wall clock time and date at job start Sun Mar 29 2020 22:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47104 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46986 * 119.99876 * 9 7 5 12 12 H 1.48494 * 109.47457 * 240.00237 * 9 7 5 13 13 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 14 14 C 1.34777 * 120.00033 * 275.00400 * 13 3 2 15 15 O 1.21702 * 119.99699 * 359.97438 * 14 13 3 16 16 C 1.46576 * 120.00011 * 179.97438 * 14 13 3 17 17 C 1.36647 * 125.46147 * 180.02562 * 16 14 13 18 18 C 1.37464 * 113.30278 * 179.97438 * 17 16 14 19 19 C 1.33825 * 115.10018 * 359.97438 * 18 17 16 20 20 S 1.70615 * 110.95180 * 359.72357 * 19 18 17 21 21 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 22 22 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 23 23 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 25 25 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 26 26 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 27 27 H 0.97000 * 119.99812 * 94.99561 * 13 3 2 28 28 H 1.08004 * 123.34740 * 359.97193 * 17 16 14 29 29 H 1.07999 * 122.45314 * 180.02562 * 18 17 16 30 30 H 1.07999 * 124.52070 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8811 -1.3816 10 1 6.5988 1.5461 -0.1940 11 1 6.4971 -0.5176 -1.4627 12 1 6.3992 1.6165 -2.6099 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3419 2.6326 0.4308 16 6 0.0471 3.3193 2.6195 17 6 -1.1536 3.9266 2.8578 18 6 -1.2518 4.4607 4.1206 19 6 -0.1703 4.2972 4.8917 20 16 1.0486 3.4413 4.0596 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.8295 -0.0613 -2.9496 27 1 2.2719 2.1231 1.9978 28 1 -1.9466 3.9815 2.1266 29 1 -2.1372 4.9740 4.4655 30 1 -0.0829 4.6548 5.9071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177560.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:15 Heat of formation + Delta-G solvation = -32.450746 kcal Electronic energy + Delta-G solvation = -14780.315602 eV Core-core repulsion = 12280.199767 eV Total energy + Delta-G solvation = -2500.115835 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.77841 -38.47706 -36.86458 -34.35971 -32.98151 -30.67834 -28.90420 -26.01802 -24.85080 -22.74935 -21.37710 -20.34387 -19.69138 -18.13926 -17.29489 -16.68367 -16.45372 -16.32620 -15.57927 -14.69883 -14.60946 -14.24421 -13.71912 -13.61493 -13.40188 -13.23433 -13.16612 -12.85391 -12.71000 -12.17702 -12.07641 -11.85864 -11.61857 -11.07986 -10.91879 -10.55667 -9.92589 -9.64364 -9.47954 -8.17546 -6.35300 -0.40159 0.55193 1.02044 1.44385 1.45349 1.52417 1.57525 2.31314 2.35094 2.57984 3.12118 3.98927 4.18834 4.41910 4.46585 4.54648 4.60245 4.72894 5.02246 5.07654 5.21781 5.29635 5.40554 5.42719 5.50633 5.57609 5.75780 5.87862 6.13476 6.71005 6.86749 7.28869 7.45294 8.88377 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.034174 B = 0.006757 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.144064 B = 4142.918878 C = 4699.815715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.972 3.028 10 H -0.261 1.261 11 H -0.277 1.277 12 H -0.283 1.283 13 N -0.701 5.701 14 C 0.570 3.430 15 O -0.580 6.580 16 C -0.297 4.297 17 C -0.066 4.066 18 C -0.156 4.156 19 C -0.218 4.218 20 S 0.222 5.778 21 H 0.040 0.960 22 H 0.027 0.973 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.041 0.959 26 H 0.266 0.734 27 H 0.398 0.602 28 H 0.144 0.856 29 H 0.174 0.826 30 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.134 5.947 15.399 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.019 0.981 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.358 3.642 15 O -0.463 6.463 16 C -0.417 4.417 17 C -0.100 4.100 18 C -0.186 4.186 19 C -0.356 4.356 20 S 0.489 5.511 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.067 0.933 24 H 0.094 0.906 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.232 0.768 28 H 0.161 0.839 29 H 0.191 0.809 30 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.163 5.326 14.950 16.183 hybrid contribution -0.492 0.375 -0.751 0.973 sum -3.655 5.702 14.200 15.732 Atomic orbital electron populations 1.21688 0.97027 0.99295 1.00185 1.21795 0.93744 0.98950 1.01507 1.18469 0.93987 0.89299 0.80833 0.98055 1.21576 0.91151 1.39198 1.06896 0.91118 1.25773 1.03480 0.94207 0.94878 1.70050 1.37094 1.38222 1.09865 0.85298 0.78876 0.77934 0.78247 1.18447 1.20264 1.20920 1.46198 1.14880 1.55981 1.17827 1.17497 0.82106 0.78139 0.86497 1.90756 1.52599 1.61830 1.41119 1.24737 1.02571 1.14547 0.99889 1.21019 0.95677 0.95129 0.98196 1.20227 1.01466 1.04413 0.92473 1.25789 0.97893 1.05313 1.06587 1.82993 1.16742 1.50108 1.01296 0.94144 0.95387 0.93280 0.90593 0.93985 0.92478 0.76758 0.83858 0.80895 0.77800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.51 71.98 0.61 -5.20 16 2 C -0.12 -6.11 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.64 2.24 44.24 0.10 14.74 16 4 H 0.00 0.10 7.58 -2.39 -0.02 0.08 16 5 C -0.55 -29.56 8.73 25.60 0.22 -29.34 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.02 0.91 5.29 84.66 0.45 1.36 16 8 N -0.91 -52.50 11.29 21.45 0.24 -52.26 16 9 Si 0.97 42.14 29.54 68.60 2.03 44.17 16 10 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 13 N -0.70 -30.89 5.02 -450.16 -2.26 -33.15 16 14 C 0.57 24.60 6.35 86.42 0.55 25.15 16 15 O -0.58 -29.31 13.97 -4.35 -0.06 -29.37 16 16 C -0.30 -9.78 6.45 24.07 0.16 -9.63 16 17 C -0.07 -1.85 10.01 21.71 0.22 -1.63 16 18 C -0.16 -3.06 10.15 21.08 0.21 -2.85 16 19 C -0.22 -3.78 10.92 66.82 0.73 -3.05 16 20 S 0.22 5.14 22.16 -56.49 -1.25 3.89 16 21 H 0.04 1.84 5.64 -2.39 -0.01 1.83 16 22 H 0.03 1.39 7.84 -2.38 -0.02 1.37 16 23 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.08 4.24 5.95 -2.38 -0.01 4.22 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 27 H 0.40 15.27 7.65 -92.71 -0.71 14.56 16 28 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 29 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 30 H 0.21 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -66.78 268.57 2.56 -64.22 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.44 Total: 18.88 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 3.42 Total: -16.39 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -2.02 Total: -85.41 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.06 Total: -29.37 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 5.14 SS G_CDS: -1.25 Total: 3.89 kcal Total: -66.78 2.56 -64.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177560.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.774 kcal (2) G-P(sol) polarization free energy of solvation -66.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds