Wall clock time and date at job start Sun Mar 29 2020 22:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47190 * 2 1 4 4 N 1.46500 * 109.47013 * 119.99545 * 2 1 3 5 5 C 1.36934 * 120.00174 * 305.35955 * 4 2 1 6 6 H 1.08001 * 120.00198 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99965 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00000 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47208 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47332 * 119.99755 * 9 7 5 12 12 H 1.48494 * 109.47524 * 240.00260 * 9 7 5 13 13 C 1.50695 * 109.47328 * 239.99680 * 2 1 3 14 14 C 1.38240 * 119.98525 * 84.15936 * 13 2 1 15 15 C 1.38216 * 120.01291 * 179.72846 * 14 13 2 16 16 C 1.38354 * 119.98392 * 0.54298 * 15 14 13 17 17 Cl 1.73602 * 120.01314 * 179.70195 * 16 15 14 18 18 C 1.38352 * 119.97680 * 359.73496 * 16 15 14 19 19 C 1.38212 * 119.98387 * 359.97438 * 18 16 15 20 20 H 1.09002 * 109.46931 * 300.00387 * 1 2 3 21 21 H 1.08993 * 109.46817 * 59.99982 * 1 2 3 22 22 H 1.09002 * 109.46995 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47215 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.46738 * 300.00095 * 3 2 1 25 25 H 1.09003 * 109.47011 * 59.99762 * 3 2 1 26 26 H 0.97005 * 120.00109 * 125.62813 * 4 2 1 27 27 H 0.97000 * 119.99894 * 180.02562 * 8 7 5 28 28 H 1.07996 * 119.99663 * 359.97438 * 14 13 2 29 29 H 1.08002 * 120.01123 * 180.27333 * 15 14 13 30 30 H 1.08000 * 120.00652 * 179.97438 * 18 16 15 31 31 H 1.08001 * 119.99225 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.5996 -0.2900 2.4369 6 1 0.9096 0.5352 2.5337 7 6 2.0627 -0.9440 3.5704 8 7 2.9039 -1.9493 3.4526 9 14 1.4920 -0.3972 5.2630 10 1 0.5538 0.7456 5.1238 11 1 0.8016 -1.5239 5.9405 12 1 2.6661 0.0211 6.0701 13 6 2.0324 -0.7104 -1.2304 14 6 2.1479 -0.0249 -2.4253 15 6 2.6139 -0.6745 -3.5527 16 6 2.9542 -2.0140 -3.4880 17 17 3.5323 -2.8326 -4.9055 18 6 2.8330 -2.7010 -2.2932 19 6 2.3726 -2.0488 -1.1650 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1301 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 2.6414 -1.4290 1.1097 27 1 3.2273 -2.4065 4.2446 28 1 1.8777 1.0194 -2.4769 29 1 2.7082 -0.1378 -4.4852 30 1 3.0981 -3.7467 -2.2422 31 1 2.2775 -2.5851 -0.2324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057846667.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:27 Heat of formation + Delta-G solvation = 24.555036 kcal Electronic energy + Delta-G solvation = -14790.034736 eV Core-core repulsion = 12290.347151 eV Total energy + Delta-G solvation = -2499.687585 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.46953 -36.77586 -35.67843 -32.53167 -30.92461 -29.62929 -28.46096 -26.51938 -24.30935 -22.39398 -22.14671 -18.97373 -17.55580 -16.58247 -15.47414 -14.87810 -14.36902 -13.98658 -13.60639 -13.35930 -13.26384 -12.79593 -12.48687 -12.13122 -11.56367 -11.54194 -11.33180 -11.08904 -10.90328 -10.82661 -10.55998 -10.50876 -10.38306 -9.87209 -9.56637 -8.98362 -8.77242 -8.26449 -7.01094 -5.79819 -3.08572 1.42359 1.56218 2.27980 3.41468 3.47221 3.49382 3.91952 4.55788 5.01309 5.09742 5.19010 5.48287 5.53657 5.62201 5.73210 5.84625 6.02901 6.06540 6.19974 6.29036 6.38319 6.46281 6.55095 6.59785 6.67327 6.95149 6.97635 7.11158 7.14036 7.70065 8.38463 9.50147 10.04815 10.40452 11.43236 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.041345 B = 0.005873 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.069944 B = 4766.515428 C = 5222.264401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.228 3.772 3 C -0.153 4.153 4 N -0.719 5.719 5 C -0.233 4.233 6 H 0.073 0.927 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.055 4.055 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.046 4.046 17 Cl -0.088 7.088 18 C -0.110 4.110 19 C -0.094 4.094 20 H 0.061 0.939 21 H 0.039 0.961 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.385 0.615 27 H 0.255 0.745 28 H 0.131 0.869 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 1.782 -13.637 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.137 3.863 3 C -0.212 4.212 4 N -0.363 5.363 5 C -0.364 4.364 6 H 0.091 0.909 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.056 4.056 14 C -0.127 4.127 15 C -0.134 4.134 16 C -0.073 4.073 17 Cl -0.060 7.060 18 C -0.129 4.129 19 C -0.113 4.113 20 H 0.080 0.920 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.222 0.778 27 H 0.065 0.935 28 H 0.149 0.851 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.358 1.774 -13.599 13.781 hybrid contribution 0.066 -0.089 0.864 0.871 sum -1.292 1.685 -12.735 12.910 Atomic orbital electron populations 1.22182 0.96280 1.01491 1.00417 1.18527 0.92466 0.90852 0.84430 1.22350 1.01078 0.97439 1.00336 1.42626 1.54455 1.39053 1.00124 1.19199 1.21410 1.12415 0.83359 0.90897 1.24720 0.99931 0.98497 0.97757 1.69657 1.35961 1.24263 1.28326 0.86148 0.77757 0.77672 0.84800 1.20563 1.21922 1.21932 1.20380 0.95787 0.93997 0.95389 1.21030 0.99827 1.00179 0.91673 1.20929 1.00631 0.92598 0.99261 1.20861 1.04718 0.93508 0.88174 1.98335 1.87747 1.79448 1.40453 1.21058 1.00353 1.00316 0.91159 1.21246 0.97037 0.94610 0.98378 0.91976 0.94187 0.92953 0.93052 0.94094 0.92169 0.77849 0.93540 0.85100 0.85540 0.85316 0.83852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.34 37.16 0.31 -2.28 16 2 C 0.23 4.37 0.98 -132.97 -0.13 4.24 16 3 C -0.15 -2.70 7.97 37.16 0.30 -2.41 16 4 N -0.72 -17.16 4.84 -48.31 -0.23 -17.39 16 5 C -0.23 -6.15 8.70 -15.06 -0.13 -6.28 16 6 H 0.07 1.87 6.69 -52.49 -0.35 1.52 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 9 Si 0.90 21.94 29.55 -169.99 -5.02 16.91 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 C -0.05 -0.94 4.80 -104.62 -0.50 -1.44 16 14 C -0.11 -1.58 9.15 -39.59 -0.36 -1.94 16 15 C -0.12 -1.56 9.83 -39.55 -0.39 -1.95 16 16 C -0.05 -0.66 6.32 -39.50 -0.25 -0.91 16 17 Cl -0.09 -1.12 28.96 -51.86 -1.50 -2.62 16 18 C -0.11 -1.67 9.83 -39.55 -0.39 -2.06 16 19 C -0.09 -1.63 9.00 -39.59 -0.36 -1.98 16 20 H 0.06 1.17 6.99 -51.93 -0.36 0.81 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.59 6.52 -51.93 -0.34 0.25 16 25 H 0.06 1.13 7.59 -51.93 -0.39 0.74 16 26 H 0.39 9.77 5.72 -40.82 -0.23 9.53 16 27 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.13 1.65 6.35 -52.49 -0.33 1.31 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.14 2.72 6.49 -52.49 -0.34 2.38 16 LS Contribution 273.35 15.07 4.12 4.12 Total: -1.00 -28.33 273.35 -7.52 -35.85 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -3.60 Total: 7.35 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -2.00 Total: -17.47 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.49 Total: -44.14 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.33 -7.52 -35.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057846667.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.400 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds