Wall clock time and date at job start Sun Mar 29 2020 22:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47190 * 2 1 4 4 N 1.46500 * 109.47013 * 119.99545 * 2 1 3 5 5 C 1.36934 * 120.00174 * 305.35955 * 4 2 1 6 6 H 1.08001 * 120.00198 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99965 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00000 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47208 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47332 * 119.99755 * 9 7 5 12 12 H 1.48494 * 109.47524 * 240.00260 * 9 7 5 13 13 C 1.50695 * 109.47328 * 239.99680 * 2 1 3 14 14 C 1.38240 * 119.98525 * 84.15936 * 13 2 1 15 15 C 1.38216 * 120.01291 * 179.72846 * 14 13 2 16 16 C 1.38354 * 119.98392 * 0.54298 * 15 14 13 17 17 Cl 1.73602 * 120.01314 * 179.70195 * 16 15 14 18 18 C 1.38352 * 119.97680 * 359.73496 * 16 15 14 19 19 C 1.38212 * 119.98387 * 359.97438 * 18 16 15 20 20 H 1.09002 * 109.46931 * 300.00387 * 1 2 3 21 21 H 1.08993 * 109.46817 * 59.99982 * 1 2 3 22 22 H 1.09002 * 109.46995 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47215 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.46738 * 300.00095 * 3 2 1 25 25 H 1.09003 * 109.47011 * 59.99762 * 3 2 1 26 26 H 0.97005 * 120.00109 * 125.62813 * 4 2 1 27 27 H 0.97000 * 119.99894 * 180.02562 * 8 7 5 28 28 H 1.07996 * 119.99663 * 359.97438 * 14 13 2 29 29 H 1.08002 * 120.01123 * 180.27333 * 15 14 13 30 30 H 1.08000 * 120.00652 * 179.97438 * 18 16 15 31 31 H 1.08001 * 119.99225 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.5996 -0.2900 2.4369 6 1 0.9096 0.5352 2.5337 7 6 2.0627 -0.9440 3.5704 8 7 2.9039 -1.9493 3.4526 9 14 1.4920 -0.3972 5.2630 10 1 0.5538 0.7456 5.1238 11 1 0.8016 -1.5239 5.9405 12 1 2.6661 0.0211 6.0701 13 6 2.0324 -0.7104 -1.2304 14 6 2.1479 -0.0249 -2.4253 15 6 2.6139 -0.6745 -3.5527 16 6 2.9542 -2.0140 -3.4880 17 17 3.5323 -2.8326 -4.9055 18 6 2.8330 -2.7010 -2.2932 19 6 2.3726 -2.0488 -1.1650 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1301 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 2.6414 -1.4290 1.1097 27 1 3.2273 -2.4065 4.2446 28 1 1.8777 1.0194 -2.4769 29 1 2.7082 -0.1378 -4.4852 30 1 3.0981 -3.7467 -2.2422 31 1 2.2775 -2.5851 -0.2324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057846667.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:27 Heat of formation + Delta-G solvation = 9.161272 kcal Electronic energy + Delta-G solvation = -14790.702260 eV Core-core repulsion = 12290.347151 eV Total energy + Delta-G solvation = -2500.355109 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.73811 -38.06518 -36.98920 -34.40520 -32.18035 -31.17254 -30.00122 -27.95247 -26.17073 -23.73283 -23.42512 -20.44104 -19.29130 -18.03241 -16.97446 -16.18669 -16.01670 -15.47598 -15.19478 -14.65892 -14.56036 -14.21918 -14.01200 -13.48128 -13.21602 -12.97837 -12.76448 -12.67305 -12.34101 -12.33136 -12.13671 -12.02078 -11.79855 -11.53263 -11.32235 -10.94708 -9.94049 -9.49781 -8.96184 -7.90166 -5.17283 0.22560 0.39061 1.17970 1.48532 1.48957 1.58228 2.58065 2.72298 3.45246 3.79148 3.82387 3.98898 4.02672 4.35974 4.43644 4.54787 4.60807 4.79582 4.91312 5.02160 5.06414 5.08947 5.13863 5.26396 5.33038 5.51331 5.54123 5.63658 5.78544 5.90042 6.32915 7.39047 8.13828 8.37415 9.34301 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.041345 B = 0.005873 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.069944 B = 4766.515428 C = 5222.264401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.218 3.782 3 C -0.145 4.145 4 N -0.732 5.732 5 C -0.219 4.219 6 H 0.080 0.920 7 C -0.079 4.079 8 N -0.973 5.973 9 Si 0.965 3.035 10 H -0.265 1.265 11 H -0.298 1.298 12 H -0.298 1.298 13 C -0.072 4.072 14 C -0.102 4.102 15 C -0.106 4.106 16 C -0.048 4.048 17 Cl -0.071 7.071 18 C -0.114 4.114 19 C -0.114 4.114 20 H 0.048 0.952 21 H 0.075 0.925 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.374 0.626 27 H 0.248 0.752 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.138 0.862 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 3.358 -15.782 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.129 3.871 3 C -0.205 4.205 4 N -0.374 5.374 5 C -0.351 4.351 6 H 0.097 0.903 7 C -0.271 4.271 8 N -0.625 5.625 9 Si 0.795 3.205 10 H -0.189 1.189 11 H -0.225 1.225 12 H -0.226 1.226 13 C -0.073 4.073 14 C -0.120 4.120 15 C -0.124 4.124 16 C -0.075 4.075 17 Cl -0.042 7.042 18 C -0.132 4.132 19 C -0.133 4.133 20 H 0.067 0.933 21 H 0.093 0.907 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.208 0.792 27 H 0.057 0.943 28 H 0.175 0.825 29 H 0.177 0.823 30 H 0.156 0.844 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.987 3.390 -15.782 16.264 hybrid contribution 0.249 -0.585 1.354 1.496 sum -1.738 2.805 -14.428 14.800 Atomic orbital electron populations 1.22098 0.95281 1.00857 1.01458 1.18814 0.93142 0.91489 0.83642 1.22253 1.00264 0.96332 1.01608 1.42867 1.54260 1.39196 1.01096 1.19547 1.19799 1.11298 0.84446 0.90257 1.25458 1.01137 0.99336 1.01160 1.69814 1.38100 1.26031 1.28559 0.85179 0.77156 0.77381 0.80750 1.18892 1.22541 1.22556 1.20271 0.97399 0.93937 0.95674 1.21242 0.98962 1.01174 0.90608 1.21280 0.98821 0.92211 1.00126 1.20990 1.04088 0.94067 0.88316 1.98345 1.87466 1.79249 1.39170 1.21114 1.00147 1.00878 0.91089 1.21051 0.99055 0.95136 0.98059 0.93299 0.90658 0.94450 0.94251 0.89991 0.93672 0.79219 0.94328 0.82480 0.82348 0.84443 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 8.34 71.98 0.60 -4.17 16 2 C 0.22 8.18 0.98 2.86 0.00 8.18 16 3 C -0.15 -4.86 7.97 71.98 0.57 -4.29 16 4 N -0.73 -35.65 4.84 -306.74 -1.49 -37.13 16 5 C -0.22 -11.70 8.70 84.04 0.73 -10.97 16 6 H 0.08 4.06 6.69 -2.91 -0.02 4.04 16 7 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 8 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 9 Si 0.96 45.90 29.55 68.60 2.03 47.93 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 12 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 13 C -0.07 -2.39 4.80 -19.86 -0.10 -2.49 16 14 C -0.10 -2.60 9.15 22.26 0.20 -2.40 16 15 C -0.11 -2.46 9.83 22.29 0.22 -2.25 16 16 C -0.05 -1.25 6.32 22.32 0.14 -1.11 16 17 Cl -0.07 -1.61 28.96 -2.72 -0.08 -1.69 16 18 C -0.11 -3.37 9.83 22.29 0.22 -3.15 16 19 C -0.11 -4.00 9.00 22.27 0.20 -3.80 16 20 H 0.05 1.78 6.99 -2.39 -0.02 1.77 16 21 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.08 2.03 6.52 -2.39 -0.02 2.02 16 25 H 0.04 1.62 7.59 -2.39 -0.02 1.60 16 26 H 0.37 19.77 5.72 -92.70 -0.53 19.24 16 27 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 28 H 0.16 3.15 6.35 -2.91 -0.02 3.13 16 29 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 31 H 0.11 4.61 6.49 -2.91 -0.02 4.59 16 Total: -1.00 -61.78 273.35 4.62 -57.16 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.61 Total: 23.22 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 3.26 Total: -30.46 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -1.20 Total: -96.16 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -61.78 4.62 -57.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057846667.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.322 kcal (2) G-P(sol) polarization free energy of solvation -61.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds