Wall clock time and date at job start Sun Mar 29 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00145 * 2 1 4 4 N 1.46501 * 109.47413 * 125.00075 * 3 2 1 5 5 C 1.36762 * 127.13937 * 270.01527 * 4 3 2 6 6 C 1.50700 * 126.34319 * 359.97438 * 5 4 3 7 7 N 1.30305 * 107.31517 * 179.97438 * 5 4 3 8 8 N 1.28524 * 110.07735 * 0.02562 * 7 5 4 9 9 C 1.31279 * 109.86182 * 0.02562 * 8 7 5 10 10 S 1.76192 * 126.48644 * 180.02562 * 9 8 7 11 11 C 1.81001 * 100.00087 * 359.97375 * 10 9 8 12 12 C 1.50696 * 109.47158 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00051 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00192 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99445 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00259 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47539 * 89.99548 * 16 14 12 18 18 H 1.48505 * 109.47133 * 209.99911 * 16 14 12 19 19 H 1.48505 * 109.47253 * 329.99492 * 16 14 12 20 20 H 1.07995 * 120.00118 * 180.02562 * 1 2 3 21 21 H 1.08005 * 119.99763 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.00435 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.47133 * 4.99846 * 3 2 1 24 24 H 1.09004 * 109.47516 * 244.99866 * 3 2 1 25 25 H 1.08994 * 109.46858 * 269.99756 * 6 5 4 26 26 H 1.09001 * 109.46950 * 29.99516 * 6 5 4 27 27 H 1.08998 * 109.46965 * 149.99634 * 6 5 4 28 28 H 1.09000 * 109.46608 * 299.99574 * 11 10 9 29 29 H 1.08995 * 109.46795 * 60.00035 * 11 10 9 30 30 H 0.97002 * 119.99299 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7447 1.7933 2.3945 6 6 1.4477 2.3774 2.8923 7 7 3.8365 1.6344 3.0878 8 7 4.7520 1.1085 2.3549 9 6 4.2898 0.9023 1.1435 10 16 5.1739 0.2013 -0.2098 11 6 6.7737 -0.0992 0.5817 12 6 7.7203 -0.7144 -0.4165 13 1 7.3902 -0.9056 -1.4270 14 6 9.0074 -1.0343 -0.0396 15 7 9.4091 -0.8020 1.1910 16 14 10.1805 -1.7976 -1.2767 17 1 10.9203 -0.7228 -1.9858 18 1 11.1443 -2.6771 -0.5675 19 1 9.4096 -2.5997 -2.2603 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5400 0.9354 0.0004 22 1 1.8501 -0.9353 0.0004 23 1 1.3586 2.1317 0.0895 24 1 2.6214 1.4026 -0.9314 25 1 1.4496 3.4555 2.7320 26 1 0.6156 1.9306 2.3482 27 1 1.3400 2.1685 3.9566 28 1 7.1856 0.8448 0.9383 29 1 6.6406 -0.7788 1.4234 30 1 10.3148 -1.0267 1.4561 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060383960.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:40 Heat of formation + Delta-G solvation = 85.628590 kcal Electronic energy + Delta-G solvation = -14312.532069 eV Core-core repulsion = 11849.829289 eV Total energy + Delta-G solvation = -2462.702780 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.44784 -36.20897 -33.19625 -32.76109 -32.06144 -28.69984 -27.57842 -26.63497 -23.20675 -22.29487 -20.83117 -20.11802 -17.56839 -16.40932 -16.12288 -15.92769 -14.87964 -14.73064 -14.16523 -13.79163 -13.21386 -13.07467 -12.68725 -12.41269 -12.35968 -12.28013 -11.71643 -11.28079 -10.91841 -10.82086 -10.50595 -10.07839 -9.95415 -9.79861 -9.65705 -9.32530 -9.21299 -8.59686 -6.85603 -6.18982 -4.27542 1.67433 1.96461 2.06136 3.03201 3.25645 3.25683 3.31355 3.33453 3.49196 4.33362 4.45124 4.55602 4.58592 4.92866 5.06228 5.17159 5.22750 5.38654 5.56284 5.64454 5.81418 6.04588 6.26941 6.33736 6.39445 7.05331 7.13386 7.24473 7.68351 7.93769 8.73193 9.11487 9.35913 10.91378 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.038224 B = 0.005862 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.344811 B = 4775.039678 C = 5368.678786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.171 4.171 3 C 0.137 3.863 4 N -0.469 5.469 5 C 0.159 3.841 6 C -0.059 4.059 7 N -0.289 5.289 8 N -0.291 5.291 9 C 0.179 3.821 10 S -0.059 6.059 11 C 0.080 3.920 12 C -0.527 4.527 13 H 0.067 0.933 14 C 0.071 3.929 15 N -0.881 5.881 16 Si 0.908 3.092 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.271 1.271 20 H 0.105 0.895 21 H 0.099 0.901 22 H 0.121 0.879 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.811 4.091 -2.868 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.190 4.190 3 C 0.014 3.986 4 N -0.165 5.165 5 C -0.110 4.110 6 C -0.118 4.118 7 N -0.130 5.130 8 N -0.134 5.134 9 C -0.195 4.195 10 S 0.169 5.831 11 C -0.067 4.067 12 C -0.567 4.567 13 H 0.085 0.915 14 C -0.135 4.135 15 N -0.517 5.517 16 Si 0.734 3.266 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.196 1.196 20 H 0.123 0.877 21 H 0.118 0.882 22 H 0.139 0.861 23 H 0.116 0.884 24 H 0.125 0.875 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.032 3.905 -2.661 17.675 hybrid contribution 0.179 -0.210 -0.399 0.485 sum -16.853 3.695 -3.060 17.523 Atomic orbital electron populations 1.23897 0.95351 1.02388 0.99137 1.23197 0.96287 0.98573 1.00930 1.20930 0.91859 0.97079 0.88715 1.46465 1.10474 1.48491 1.11072 1.24918 0.99560 1.04229 0.82317 1.20106 0.88773 1.00351 1.02562 1.73937 0.97413 1.15732 1.25888 1.74824 1.22206 1.17270 0.99104 1.27408 0.85943 1.04276 1.01862 1.85375 1.14689 1.73536 1.09465 1.21322 0.85358 1.01720 0.98332 1.20586 0.95979 1.43203 0.96933 0.91493 1.24945 0.97632 0.95233 0.95656 1.69994 1.18547 1.46180 1.17028 0.86340 0.80328 0.79166 0.80719 1.20268 1.20861 1.19551 0.87650 0.88240 0.86113 0.88442 0.87450 0.90137 0.90882 0.89010 0.92927 0.92912 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 14.32 29.01 0.42 -0.91 16 2 C -0.17 -1.81 9.85 -36.03 -0.35 -2.16 16 3 C 0.14 1.57 6.19 -5.19 -0.03 1.54 16 4 N -0.47 -7.70 2.80 -114.81 -0.32 -8.02 16 5 C 0.16 2.61 8.07 -153.99 -1.24 1.37 16 6 C -0.06 -0.60 10.09 36.01 0.36 -0.23 16 7 N -0.29 -6.11 12.18 33.00 0.40 -5.71 16 8 N -0.29 -6.91 11.60 30.68 0.36 -6.56 16 9 C 0.18 3.74 8.07 -88.34 -0.71 3.03 16 10 S -0.06 -1.27 21.72 -107.50 -2.34 -3.61 16 11 C 0.08 2.14 4.99 36.00 0.18 2.32 16 12 C -0.53 -14.63 9.13 -34.44 -0.31 -14.95 16 13 H 0.07 1.79 7.71 -52.48 -0.40 1.39 16 14 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 15 N -0.88 -26.03 13.29 55.43 0.74 -25.29 16 16 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 21 H 0.10 0.59 7.84 -52.48 -0.41 0.18 16 22 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 23 H 0.10 0.81 7.53 -51.93 -0.39 0.42 16 24 H 0.11 1.23 7.86 -51.93 -0.41 0.82 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.57 7.92 -51.93 -0.41 0.16 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 1.52 8.14 -51.92 -0.42 1.09 16 29 H 0.05 1.52 8.14 -51.92 -0.42 1.10 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 284.46 15.07 4.29 4.29 Total: -1.00 -33.03 284.46 -7.39 -40.42 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -3.70 Total: -3.46 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.80 Total: -8.11 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 1.17 Total: -45.58 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.27 SS G_CDS: -2.34 Total: -3.61 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.03 -7.39 -40.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060383960.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.050 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds