Wall clock time and date at job start Sun Mar 29 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00145 * 2 1 4 4 N 1.46501 * 109.47413 * 125.00075 * 3 2 1 5 5 C 1.36762 * 127.13937 * 270.01527 * 4 3 2 6 6 C 1.50700 * 126.34319 * 359.97438 * 5 4 3 7 7 N 1.30305 * 107.31517 * 179.97438 * 5 4 3 8 8 N 1.28524 * 110.07735 * 0.02562 * 7 5 4 9 9 C 1.31279 * 109.86182 * 0.02562 * 8 7 5 10 10 S 1.76192 * 126.48644 * 180.02562 * 9 8 7 11 11 C 1.81001 * 100.00087 * 359.97375 * 10 9 8 12 12 C 1.50696 * 109.47158 * 180.02562 * 11 10 9 13 13 H 1.08007 * 120.00051 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00192 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99445 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00259 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47539 * 89.99548 * 16 14 12 18 18 H 1.48505 * 109.47133 * 209.99911 * 16 14 12 19 19 H 1.48505 * 109.47253 * 329.99492 * 16 14 12 20 20 H 1.07995 * 120.00118 * 180.02562 * 1 2 3 21 21 H 1.08005 * 119.99763 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.00435 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.47133 * 4.99846 * 3 2 1 24 24 H 1.09004 * 109.47516 * 244.99866 * 3 2 1 25 25 H 1.08994 * 109.46858 * 269.99756 * 6 5 4 26 26 H 1.09001 * 109.46950 * 29.99516 * 6 5 4 27 27 H 1.08998 * 109.46965 * 149.99634 * 6 5 4 28 28 H 1.09000 * 109.46608 * 299.99574 * 11 10 9 29 29 H 1.08995 * 109.46795 * 60.00035 * 11 10 9 30 30 H 0.97002 * 119.99299 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7447 1.7933 2.3945 6 6 1.4477 2.3774 2.8923 7 7 3.8365 1.6344 3.0878 8 7 4.7520 1.1085 2.3549 9 6 4.2898 0.9023 1.1435 10 16 5.1739 0.2013 -0.2098 11 6 6.7737 -0.0992 0.5817 12 6 7.7203 -0.7144 -0.4165 13 1 7.3902 -0.9056 -1.4270 14 6 9.0074 -1.0343 -0.0396 15 7 9.4091 -0.8020 1.1910 16 14 10.1805 -1.7976 -1.2767 17 1 10.9203 -0.7228 -1.9858 18 1 11.1443 -2.6771 -0.5675 19 1 9.4096 -2.5997 -2.2603 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5400 0.9354 0.0004 22 1 1.8501 -0.9353 0.0004 23 1 1.3586 2.1317 0.0895 24 1 2.6214 1.4026 -0.9314 25 1 1.4496 3.4555 2.7320 26 1 0.6156 1.9306 2.3482 27 1 1.3400 2.1685 3.9566 28 1 7.1856 0.8448 0.9383 29 1 6.6406 -0.7788 1.4234 30 1 10.3148 -1.0267 1.4561 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060383960.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:40 Heat of formation + Delta-G solvation = 65.180357 kcal Electronic energy + Delta-G solvation = -14313.418770 eV Core-core repulsion = 11849.829289 eV Total energy + Delta-G solvation = -2463.589482 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.89186 -37.25884 -35.33725 -33.82392 -33.27839 -30.82279 -28.84532 -27.62557 -25.30113 -23.81883 -22.04609 -20.99865 -19.11427 -18.28183 -17.44429 -17.38717 -16.62992 -15.84944 -15.41433 -14.94630 -14.61941 -14.55282 -14.37750 -13.80802 -13.67073 -13.19841 -12.91188 -12.74713 -12.62117 -12.49756 -12.32893 -11.70409 -11.62692 -11.28197 -11.10577 -10.88589 -10.65312 -10.54641 -8.57946 -8.33299 -6.51978 0.21967 0.61397 1.05698 1.41115 1.44490 1.45866 1.57793 1.73958 1.92540 2.36674 3.01058 3.45096 3.62606 3.77846 3.99714 4.16024 4.45121 4.53982 4.67608 4.82488 4.87005 4.90541 4.99890 5.00541 5.05662 5.51526 5.55429 5.62710 5.77626 5.88814 6.57222 7.17898 7.61625 8.79125 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.038224 B = 0.005862 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.344811 B = 4775.039678 C = 5368.678786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.208 4.208 3 C 0.129 3.871 4 N -0.459 5.459 5 C 0.186 3.814 6 C -0.058 4.058 7 N -0.343 5.343 8 N -0.344 5.344 9 C 0.152 3.848 10 S -0.010 6.010 11 C 0.080 3.920 12 C -0.545 4.545 13 H 0.077 0.923 14 C 0.014 3.986 15 N -0.924 5.924 16 Si 0.986 3.014 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.257 1.257 20 H 0.115 0.885 21 H 0.132 0.868 22 H 0.092 0.908 23 H 0.142 0.858 24 H 0.102 0.898 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.735 4.602 -4.535 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.228 4.228 3 C 0.009 3.991 4 N -0.154 5.154 5 C -0.084 4.084 6 C -0.117 4.117 7 N -0.183 5.183 8 N -0.187 5.187 9 C -0.224 4.224 10 S 0.219 5.781 11 C -0.068 4.068 12 C -0.585 4.585 13 H 0.095 0.905 14 C -0.187 4.187 15 N -0.562 5.562 16 Si 0.808 3.192 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.181 1.181 20 H 0.134 0.866 21 H 0.150 0.850 22 H 0.110 0.890 23 H 0.160 0.840 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.118 0.882 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.004 4.424 -4.345 20.943 hybrid contribution 0.810 -0.296 0.181 0.881 sum -19.194 4.128 -4.164 20.070 Atomic orbital electron populations 1.24219 0.94084 1.04410 0.94037 1.22946 0.97255 0.96961 1.05595 1.21397 0.91677 0.99324 0.86708 1.46796 1.09278 1.46826 1.12468 1.26126 1.00144 1.00636 0.81537 1.20497 0.86088 1.01807 1.03322 1.73825 0.98929 1.18338 1.27178 1.74693 1.24597 1.18773 1.00679 1.27203 0.88210 1.05828 1.01139 1.84724 1.10727 1.74192 1.08448 1.20870 0.89247 0.98887 0.97807 1.20971 0.96756 1.43376 0.97359 0.90509 1.26056 0.99620 0.95349 0.97699 1.70147 1.19242 1.47321 1.19475 0.85147 0.77654 0.78422 0.78016 1.19180 1.20354 1.18078 0.86636 0.85036 0.89020 0.84009 0.87942 0.87392 0.87346 0.88215 0.96590 0.96670 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 14.32 67.78 0.97 -0.46 16 2 C -0.21 -3.89 9.85 25.65 0.25 -3.64 16 3 C 0.13 2.60 6.19 85.63 0.53 3.13 16 4 N -0.46 -14.59 2.80 -517.16 -1.45 -16.03 16 5 C 0.19 5.83 8.07 137.63 1.11 6.94 16 6 C -0.06 -0.94 10.09 71.24 0.72 -0.22 16 7 N -0.34 -14.84 12.18 -49.52 -0.60 -15.44 16 8 N -0.34 -17.27 11.60 -56.86 -0.66 -17.93 16 9 C 0.15 6.59 8.07 179.55 1.45 8.04 16 10 S -0.01 -0.43 21.72 -56.49 -1.23 -1.65 16 11 C 0.08 4.58 4.99 71.23 0.36 4.94 16 12 C -0.55 -31.31 9.13 25.60 0.23 -31.08 16 13 H 0.08 4.15 7.71 -2.91 -0.02 4.13 16 14 C 0.01 0.82 5.46 84.65 0.46 1.28 16 15 N -0.92 -56.93 13.29 21.45 0.28 -56.64 16 16 Si 0.99 43.56 29.54 68.60 2.03 45.59 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 19 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 20 H 0.12 1.09 8.06 -2.91 -0.02 1.07 16 21 H 0.13 0.65 7.84 -2.91 -0.02 0.63 16 22 H 0.09 2.24 8.06 -2.91 -0.02 2.22 16 23 H 0.14 1.58 7.53 -2.38 -0.02 1.56 16 24 H 0.10 2.16 7.86 -2.38 -0.02 2.14 16 25 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.11 1.02 7.92 -2.39 -0.02 1.00 16 27 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.02 0.99 8.14 -2.40 -0.02 0.97 16 29 H 0.01 0.94 8.14 -2.40 -0.02 0.92 16 30 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -78.49 284.46 5.58 -72.91 By element: Atomic # 1 Polarization: -0.87 SS G_CDS: 1.12 Total: 0.25 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 6.08 Total: -11.06 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -2.42 Total: -106.04 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -1.23 Total: -1.65 kcal Total: -78.49 5.58 -72.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060383960.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.090 kcal (2) G-P(sol) polarization free energy of solvation -78.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds