Wall clock time and date at job start Sun Mar 29 2020 22:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35771 * 116.99818 * 2 1 4 4 C 1.38943 * 119.90998 * 359.72209 * 3 2 1 5 5 C 1.37719 * 120.11789 * 180.27204 * 4 3 2 6 6 C 1.39785 * 119.94929 * 0.02865 * 5 4 3 7 7 C 1.47493 * 120.08830 * 179.97438 * 6 5 4 8 8 O 1.21618 * 120.00033 * 179.97438 * 7 6 5 9 9 N 1.34772 * 120.00094 * 359.97438 * 7 6 5 10 10 C 1.36905 * 120.00413 * 180.02562 * 9 7 6 11 11 H 1.07996 * 119.99806 * 0.02562 * 10 9 7 12 12 C 1.39020 * 120.00110 * 180.02562 * 10 9 7 13 13 N 1.31386 * 119.99568 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00215 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47057 * 90.00213 * 14 12 10 16 16 H 1.48496 * 109.47289 * 210.00231 * 14 12 10 17 17 H 1.48499 * 109.47202 * 330.00201 * 14 12 10 18 18 C 1.39803 * 119.82675 * 359.97438 * 6 5 4 19 19 C 1.37878 * 119.87507 * 0.02562 * 18 6 5 20 20 F 1.35099 * 119.97286 * 180.02562 * 19 18 6 21 21 H 1.08996 * 109.47228 * 299.99940 * 1 2 3 22 22 H 1.08999 * 109.46831 * 60.00070 * 1 2 3 23 23 H 1.08999 * 109.46702 * 179.97438 * 1 2 3 24 24 H 1.07998 * 119.94050 * 0.25575 * 4 3 2 25 25 H 1.08008 * 120.02363 * 179.97438 * 5 4 3 26 26 H 0.97004 * 119.99837 * 359.97438 * 9 7 6 27 27 H 0.97003 * 119.99489 * 179.97438 * 13 12 10 28 28 H 1.07992 * 120.06233 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2868 2.3738 -0.0058 5 6 1.9075 3.6032 -0.0115 6 6 3.3032 3.6802 -0.0120 7 6 3.9712 4.9951 -0.0187 8 8 5.1857 5.0603 -0.0186 9 7 3.2358 6.1245 -0.0248 10 6 3.8558 7.3451 -0.0315 11 1 4.9342 7.4030 -0.0323 12 6 3.0972 8.5101 -0.0373 13 7 3.6923 9.6814 -0.0442 14 14 1.2319 8.4101 -0.0366 15 1 0.7377 8.3906 1.3636 16 1 0.6726 9.5907 -0.7426 17 1 0.8025 7.1693 -0.7304 18 6 4.0644 2.5075 -0.0062 19 6 3.4354 1.2805 -0.0005 20 9 4.1690 0.1461 0.0056 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2084 2.3144 -0.0062 25 1 1.3163 4.5071 -0.0165 26 1 2.2672 6.0726 -0.0252 27 1 3.1629 10.4943 -0.0486 28 1 5.1429 2.5626 -0.0061 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060393194.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:41 Heat of formation + Delta-G solvation = -87.458496 kcal Electronic energy + Delta-G solvation = -16286.311672 eV Core-core repulsion = 13217.597346 eV Total energy + Delta-G solvation = -3068.714326 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.65065 -40.08287 -38.69853 -36.69015 -34.21513 -31.97738 -30.60402 -30.19705 -27.64719 -25.19872 -22.90837 -22.44368 -19.75332 -19.03812 -18.17431 -16.99310 -16.72202 -16.18335 -15.40026 -15.12175 -15.03668 -14.72133 -14.20011 -13.94948 -13.77465 -13.03722 -12.74389 -12.59418 -12.26668 -12.22858 -11.81235 -11.39711 -11.11896 -11.05018 -10.72585 -10.12867 -9.75019 -8.88893 -8.74507 -8.36922 -8.12553 -6.51385 -3.95181 1.02123 1.22650 2.90074 2.95239 3.03723 3.04140 3.27648 3.93795 4.18069 4.23146 4.45462 4.66427 4.89859 4.94759 5.12296 5.15800 5.25422 5.29734 5.42705 5.62044 5.92791 6.06290 6.25653 6.46283 6.65927 7.21059 7.38478 7.98043 8.41264 8.76540 9.22616 9.67394 10.60263 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.034435 B = 0.006451 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.930353 B = 4339.426902 C = 5137.211995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.092 3.908 4 C -0.183 4.183 5 C -0.079 4.079 6 C -0.102 4.102 7 C 0.477 3.523 8 O -0.577 6.577 9 N -0.567 5.567 10 C -0.299 4.299 11 H 0.125 0.875 12 C 0.043 3.957 13 N -0.864 5.864 14 Si 0.878 3.122 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.267 1.267 18 C -0.072 4.072 19 C 0.066 3.934 20 F -0.134 7.134 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.100 0.900 24 H 0.138 0.862 25 H 0.131 0.869 26 H 0.372 0.628 27 H 0.278 0.722 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 -14.558 0.095 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.045 3.955 4 C -0.202 4.202 5 C -0.099 4.099 6 C -0.106 4.106 7 C 0.266 3.734 8 O -0.462 6.462 9 N -0.204 5.204 10 C -0.428 4.428 11 H 0.143 0.857 12 C -0.162 4.162 13 N -0.502 5.502 14 Si 0.704 3.296 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.193 1.193 18 C -0.092 4.092 19 C 0.046 3.954 20 F -0.113 7.113 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.118 0.882 24 H 0.156 0.844 25 H 0.148 0.852 26 H 0.206 0.794 27 H 0.089 0.911 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.904 -14.447 0.093 17.516 hybrid contribution -1.698 0.110 -0.021 1.701 sum -11.602 -14.337 0.072 18.444 Atomic orbital electron populations 1.23097 0.78177 1.04012 1.01584 1.86072 1.21540 1.26057 1.88774 1.19083 0.90720 0.85393 1.00289 1.20973 1.00057 0.91202 1.07964 1.21197 0.93860 0.97413 0.97408 1.20070 0.92864 0.94689 1.03002 1.17342 0.87228 0.82818 0.86025 1.90659 1.13054 1.86523 1.55955 1.42192 1.07693 1.06288 1.64249 1.19566 0.96016 0.80138 1.47076 0.85711 1.25129 0.98959 0.94901 0.97197 1.69607 1.36375 0.97472 1.46774 0.86681 0.84867 0.78794 0.79275 1.19134 1.19681 1.19292 1.21061 1.01922 0.88690 0.97551 1.16788 0.85778 0.82802 1.10049 1.91483 1.76688 1.48646 1.94461 0.92421 0.92431 0.88157 0.84403 0.85151 0.79418 0.91143 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 15 2 O -0.31 -4.02 10.35 -19.02 -0.20 -4.22 15 3 C 0.09 1.32 6.70 -38.97 -0.26 1.06 15 4 C -0.18 -2.37 9.01 -39.51 -0.36 -2.73 15 5 C -0.08 -1.21 9.53 -39.19 -0.37 -1.58 15 6 C -0.10 -1.90 5.88 -104.96 -0.62 -2.52 15 7 C 0.48 11.20 7.71 -12.49 -0.10 11.11 15 8 O -0.58 -15.77 15.91 5.26 0.08 -15.68 15 9 N -0.57 -13.43 5.03 -11.94 -0.06 -13.49 15 10 C -0.30 -8.25 10.16 -15.00 -0.15 -8.40 15 11 H 0.13 3.92 7.38 -52.49 -0.39 3.53 15 12 C 0.04 1.14 5.50 -17.45 -0.10 1.05 15 13 N -0.86 -24.21 13.96 55.50 0.77 -23.43 15 14 Si 0.88 18.35 27.74 -169.99 -4.71 13.64 15 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 17 H -0.27 -5.03 6.52 56.52 0.37 -4.66 15 18 C -0.07 -1.26 9.56 -39.13 -0.37 -1.63 15 19 C 0.07 1.06 7.30 -39.36 -0.29 0.77 15 20 F -0.13 -2.19 17.10 2.25 0.04 -2.15 15 21 H 0.06 0.40 7.66 -51.93 -0.40 0.00 15 22 H 0.06 0.40 7.64 -51.93 -0.40 0.00 15 23 H 0.10 0.57 8.14 -51.93 -0.42 0.15 15 24 H 0.14 1.31 6.27 -52.49 -0.33 0.98 15 25 H 0.13 1.80 6.39 -52.48 -0.34 1.47 15 26 H 0.37 7.61 3.78 -40.82 -0.15 7.46 15 27 H 0.28 7.13 8.31 -40.82 -0.34 6.79 15 28 H 0.15 2.73 7.64 -52.49 -0.40 2.33 15 LS Contribution 255.20 15.07 3.85 3.85 Total: -1.00 -31.58 255.20 -3.84 -35.43 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -1.99 Total: 7.75 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.62 Total: -1.68 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.71 Total: -36.92 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.11 Total: -19.90 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -4.71 Total: 13.64 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.58 -3.84 -35.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060393194.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.032 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds