Wall clock time and date at job start Sun Mar 29 2020 22:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35771 * 116.99818 * 2 1 4 4 C 1.38943 * 119.90998 * 359.72209 * 3 2 1 5 5 C 1.37719 * 120.11789 * 180.27204 * 4 3 2 6 6 C 1.39785 * 119.94929 * 0.02865 * 5 4 3 7 7 C 1.47493 * 120.08830 * 179.97438 * 6 5 4 8 8 O 1.21618 * 120.00033 * 179.97438 * 7 6 5 9 9 N 1.34772 * 120.00094 * 359.97438 * 7 6 5 10 10 C 1.36905 * 120.00413 * 180.02562 * 9 7 6 11 11 H 1.07996 * 119.99806 * 0.02562 * 10 9 7 12 12 C 1.39020 * 120.00110 * 180.02562 * 10 9 7 13 13 N 1.31386 * 119.99568 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00215 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47057 * 90.00213 * 14 12 10 16 16 H 1.48496 * 109.47289 * 210.00231 * 14 12 10 17 17 H 1.48499 * 109.47202 * 330.00201 * 14 12 10 18 18 C 1.39803 * 119.82675 * 359.97438 * 6 5 4 19 19 C 1.37878 * 119.87507 * 0.02562 * 18 6 5 20 20 F 1.35099 * 119.97286 * 180.02562 * 19 18 6 21 21 H 1.08996 * 109.47228 * 299.99940 * 1 2 3 22 22 H 1.08999 * 109.46831 * 60.00070 * 1 2 3 23 23 H 1.08999 * 109.46702 * 179.97438 * 1 2 3 24 24 H 1.07998 * 119.94050 * 0.25575 * 4 3 2 25 25 H 1.08008 * 120.02363 * 179.97438 * 5 4 3 26 26 H 0.97004 * 119.99837 * 359.97438 * 9 7 6 27 27 H 0.97003 * 119.99489 * 179.97438 * 13 12 10 28 28 H 1.07992 * 120.06233 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2868 2.3738 -0.0058 5 6 1.9075 3.6032 -0.0115 6 6 3.3032 3.6802 -0.0120 7 6 3.9712 4.9951 -0.0187 8 8 5.1857 5.0603 -0.0186 9 7 3.2358 6.1245 -0.0248 10 6 3.8558 7.3451 -0.0315 11 1 4.9342 7.4030 -0.0323 12 6 3.0972 8.5101 -0.0373 13 7 3.6923 9.6814 -0.0442 14 14 1.2319 8.4101 -0.0366 15 1 0.7377 8.3906 1.3636 16 1 0.6726 9.5907 -0.7426 17 1 0.8025 7.1693 -0.7304 18 6 4.0644 2.5075 -0.0062 19 6 3.4354 1.2805 -0.0005 20 9 4.1690 0.1461 0.0056 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2084 2.3144 -0.0062 25 1 1.3163 4.5071 -0.0165 26 1 2.2672 6.0726 -0.0252 27 1 3.1629 10.4943 -0.0486 28 1 5.1429 2.5626 -0.0061 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060393194.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:41 Heat of formation + Delta-G solvation = -110.671082 kcal Electronic energy + Delta-G solvation = -16287.318245 eV Core-core repulsion = 13217.597346 eV Total energy + Delta-G solvation = -3069.720900 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.91040 -41.32452 -40.25828 -38.03900 -36.19974 -33.94041 -31.84801 -31.48369 -28.54613 -26.95145 -24.31474 -23.66736 -21.51278 -20.77707 -19.35546 -18.50845 -17.94076 -17.21883 -16.93441 -16.89291 -16.08996 -15.82067 -15.64215 -15.63215 -15.25937 -14.77461 -14.31186 -13.99641 -13.62110 -13.34306 -12.99887 -12.82459 -12.48581 -12.15729 -12.08084 -11.98608 -11.59441 -10.70153 -10.36060 -10.10710 -9.34706 -8.49352 -6.08100 -0.27548 0.01578 1.27793 1.35900 1.44003 1.82464 2.10031 2.19332 2.61559 2.66126 3.14436 3.18579 3.60676 3.87788 3.89703 4.04614 4.37673 4.41521 4.46001 4.72472 4.77458 4.87415 4.99541 5.17594 5.41761 5.50160 5.86485 6.20969 6.47879 6.75444 7.25019 7.80634 8.67213 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.034435 B = 0.006451 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.930353 B = 4339.426902 C = 5137.211995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.325 6.325 3 C 0.116 3.884 4 C -0.166 4.166 5 C -0.060 4.060 6 C -0.133 4.133 7 C 0.482 3.518 8 O -0.628 6.628 9 N -0.565 5.565 10 C -0.335 4.335 11 H 0.060 0.940 12 C -0.009 4.009 13 N -0.920 5.920 14 Si 0.959 3.041 15 H -0.250 1.250 16 H -0.269 1.269 17 H -0.226 1.226 18 C -0.076 4.076 19 C 0.048 3.952 20 F -0.140 7.140 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.123 0.877 24 H 0.188 0.812 25 H 0.154 0.846 26 H 0.391 0.609 27 H 0.284 0.716 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.871 -16.848 0.065 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.238 6.238 3 C 0.068 3.932 4 C -0.184 4.184 5 C -0.080 4.080 6 C -0.137 4.137 7 C 0.272 3.728 8 O -0.516 6.516 9 N -0.204 5.204 10 C -0.464 4.464 11 H 0.078 0.922 12 C -0.210 4.210 13 N -0.559 5.559 14 Si 0.777 3.223 15 H -0.174 1.174 16 H -0.194 1.194 17 H -0.149 1.149 18 C -0.096 4.096 19 C 0.028 3.972 20 F -0.118 7.118 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.141 0.859 24 H 0.206 0.794 25 H 0.171 0.829 26 H 0.229 0.771 27 H 0.094 0.906 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.983 -16.781 0.062 22.497 hybrid contribution -0.100 0.544 -0.005 0.553 sum -15.084 -16.237 0.057 22.162 Atomic orbital electron populations 1.23574 0.75059 1.06339 1.03340 1.86096 1.24666 1.25153 1.87866 1.19204 0.89988 0.86788 0.97218 1.21383 1.02224 0.89177 1.05622 1.21425 0.91934 0.99514 0.95095 1.19618 0.94649 0.91760 1.07646 1.18216 0.86811 0.84526 0.83279 1.90621 1.15827 1.87750 1.57430 1.41864 1.08457 1.04879 1.65204 1.19088 0.93749 0.82786 1.50727 0.92232 1.26216 1.06047 0.93408 0.95327 1.69778 1.39388 0.98676 1.48085 0.85464 0.75586 0.80682 0.80557 1.17388 1.19363 1.14860 1.20917 1.01298 0.89491 0.97896 1.16813 0.86972 0.81987 1.11431 1.91466 1.77095 1.48637 1.94631 0.90542 0.90565 0.85929 0.79446 0.82866 0.77144 0.90622 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 15 2 O -0.32 -6.86 10.35 -90.98 -0.94 -7.80 15 3 C 0.12 2.84 6.70 22.67 0.15 2.99 15 4 C -0.17 -3.32 9.01 22.32 0.20 -3.11 15 5 C -0.06 -1.58 9.53 22.52 0.21 -1.37 15 6 C -0.13 -4.85 5.88 -20.09 -0.12 -4.97 15 7 C 0.48 23.34 7.71 86.68 0.67 24.01 15 8 O -0.63 -36.83 15.91 -4.09 -0.07 -36.90 15 9 N -0.57 -27.02 5.03 -309.93 -1.56 -28.58 15 10 C -0.33 -19.48 10.16 84.09 0.85 -18.63 15 11 H 0.06 4.13 7.38 -2.91 -0.02 4.11 15 12 C -0.01 -0.51 5.50 84.95 0.47 -0.04 15 13 N -0.92 -53.91 13.96 21.68 0.30 -53.61 15 14 Si 0.96 36.30 27.74 68.60 1.90 38.20 15 15 H -0.25 -8.84 7.11 99.48 0.71 -8.13 15 16 H -0.27 -10.04 7.11 99.48 0.71 -9.34 15 17 H -0.23 -6.93 6.52 99.48 0.65 -6.28 15 18 C -0.08 -2.67 9.56 22.56 0.22 -2.45 15 19 C 0.05 1.47 7.30 22.41 0.16 1.63 15 20 F -0.14 -4.45 17.10 44.97 0.77 -3.68 15 21 H 0.08 0.52 7.66 -2.39 -0.02 0.50 15 22 H 0.08 0.52 7.64 -2.39 -0.02 0.50 15 23 H 0.12 0.71 8.14 -2.39 -0.02 0.69 15 24 H 0.19 1.97 6.27 -2.91 -0.02 1.95 15 25 H 0.15 3.33 6.39 -2.91 -0.02 3.31 15 26 H 0.39 15.07 3.78 -92.71 -0.35 14.72 15 27 H 0.28 15.04 8.31 -92.71 -0.77 14.27 15 28 H 0.14 5.15 7.64 -2.91 -0.02 5.12 15 Total: -1.00 -76.81 255.20 5.14 -71.67 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.81 Total: 21.43 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 3.93 Total: -0.73 kcal Atomic # 7 Polarization: -80.93 SS G_CDS: -1.26 Total: -82.19 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.01 Total: -44.70 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.77 Total: -3.68 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 1.90 Total: 38.20 kcal Total: -76.81 5.14 -71.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060393194.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.004 kcal (2) G-P(sol) polarization free energy of solvation -76.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds