Wall clock time and date at job start Sun Mar 29 2020 22:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.50698 * 109.47400 * 120.00536 * 2 1 3 5 5 H 1.07997 * 120.00102 * 119.99835 * 4 2 1 6 6 C 1.37882 * 119.99878 * 300.00006 * 4 2 1 7 7 N 1.31511 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00067 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46997 * 59.99466 * 8 6 4 10 10 H 1.48497 * 109.47120 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46813 * 299.99996 * 8 6 4 12 12 N 1.46503 * 109.47031 * 240.00482 * 2 1 3 13 13 C 1.46507 * 119.99904 * 300.00042 * 12 2 1 14 14 C 1.34775 * 120.00209 * 119.99754 * 12 2 1 15 15 O 1.21702 * 120.00199 * 6.07335 * 14 12 2 16 16 C 1.46580 * 120.00188 * 186.06853 * 14 12 2 17 17 C 1.36650 * 125.46207 * 186.83119 * 16 14 12 18 18 C 1.37468 * 113.30146 * 179.97438 * 17 16 14 19 19 C 1.33818 * 115.10182 * 359.97438 * 18 17 16 20 20 S 1.70626 * 110.95077 * 359.76427 * 19 18 17 21 21 H 1.08996 * 109.46623 * 299.99406 * 1 2 3 22 22 H 1.09000 * 109.47175 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47241 * 59.99361 * 1 2 3 24 24 H 0.97000 * 119.99962 * 180.02562 * 7 6 4 25 25 H 1.08994 * 109.46975 * 95.95892 * 13 12 2 26 26 H 1.09004 * 109.46775 * 215.96143 * 13 12 2 27 27 H 1.08997 * 109.46714 * 335.96302 * 13 12 2 28 28 H 1.08004 * 123.34914 * 359.93204 * 17 16 14 29 29 H 1.07999 * 122.45084 * 180.02562 * 18 17 16 30 30 H 1.08001 * 124.52518 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3226 -1.1198 4.0079 9 1 3.8076 -1.1192 4.0075 10 1 1.8281 -0.4196 5.2204 11 1 1.8282 -2.5201 4.0079 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.1785 1.0926 -1.8384 16 6 3.1717 -0.6818 -3.3434 17 6 4.0535 -0.1793 -4.2584 18 6 4.2249 -0.9938 -5.3525 19 6 3.5098 -2.1247 -5.3360 20 16 2.5703 -2.2318 -3.9157 21 1 -0.3632 0.5137 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 0.7096 1.1616 3.4844 25 1 0.7980 -2.1449 -2.0875 26 1 2.5056 -2.6082 -1.8923 27 1 1.4262 -2.5697 -0.4773 28 1 4.5644 0.7641 -4.1347 29 1 4.8889 -0.7399 -6.1656 30 1 3.5282 -2.8721 -6.1154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094057.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:08 Heat of formation + Delta-G solvation = 2.797373 kcal Electronic energy + Delta-G solvation = -14928.463380 eV Core-core repulsion = 12429.876018 eV Total energy + Delta-G solvation = -2498.587362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.18275 -37.28080 -35.29609 -32.95408 -30.27231 -28.67744 -26.41911 -25.25804 -24.59398 -21.82457 -19.53460 -18.78901 -17.38137 -16.42080 -15.79982 -15.40399 -14.83614 -14.66774 -13.99019 -12.98030 -12.86938 -12.65196 -12.54843 -12.43341 -12.28508 -11.67904 -11.59345 -11.08330 -10.87769 -10.74358 -10.37939 -10.25500 -10.18331 -9.27777 -9.12873 -8.66272 -8.45296 -8.35731 -7.64189 -6.08944 -4.17256 0.78983 1.71972 2.15220 2.65557 3.27561 3.32891 3.34618 3.78642 3.89665 4.38663 5.04216 5.15197 5.22610 5.46506 5.56881 5.65407 5.83959 6.12313 6.24892 6.35450 6.51732 6.72865 6.80665 7.02144 7.35815 7.49005 7.68353 7.98192 8.16021 8.43238 8.78962 8.96291 9.49013 10.96480 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.041718 B = 0.006610 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.010313 B = 4235.253390 C = 4342.731986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.586 5.586 13 C 0.069 3.931 14 C 0.572 3.428 15 O -0.539 6.539 16 C -0.246 4.246 17 C -0.075 4.075 18 C -0.148 4.148 19 C -0.276 4.276 20 S 0.222 5.778 21 H 0.095 0.905 22 H 0.031 0.969 23 H 0.012 0.988 24 H 0.264 0.736 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.149 0.851 29 H 0.135 0.865 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 -7.748 -12.517 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.316 5.316 13 C -0.077 4.077 14 C 0.359 3.641 15 O -0.419 6.419 16 C -0.367 4.367 17 C -0.108 4.108 18 C -0.179 4.179 19 C -0.412 4.412 20 S 0.490 5.510 21 H 0.114 0.886 22 H 0.050 0.950 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.167 0.833 29 H 0.153 0.847 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.714 -8.121 -11.675 14.240 hybrid contribution 1.398 0.412 0.041 1.458 sum 2.113 -7.709 -11.634 14.115 Atomic orbital electron populations 1.22106 0.97905 0.99556 1.00969 1.19011 0.90933 0.94553 0.79571 0.91680 1.21271 1.32041 1.13166 0.90235 0.92197 1.24890 0.94868 0.94964 0.98967 1.69864 1.36200 1.22489 1.23952 0.86532 0.79286 0.79539 0.81899 1.20217 1.21130 1.20194 1.48144 1.48611 1.11217 1.23642 1.21786 0.99216 0.83746 1.02937 1.17032 0.79433 0.85696 0.81974 1.90780 1.55020 1.18787 1.77346 1.25052 1.08264 1.01025 1.02322 1.20736 0.96945 1.00788 0.92292 1.19944 1.03080 0.94869 1.00037 1.25792 1.06255 1.03264 1.05928 1.83639 1.42372 1.16604 1.08433 0.88637 0.95029 0.96901 0.92557 0.92953 0.92133 0.88215 0.83291 0.84713 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 2 C 0.26 6.66 2.62 -69.08 -0.18 6.48 16 3 H 0.07 1.94 6.91 -51.93 -0.36 1.58 16 4 C -0.53 -14.26 7.95 -34.44 -0.27 -14.54 16 5 H 0.06 1.58 7.43 -52.49 -0.39 1.19 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.98 11.32 55.43 0.63 -24.36 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.59 -12.88 2.75 -176.84 -0.49 -13.36 16 13 C 0.07 1.18 7.76 59.85 0.46 1.65 16 14 C 0.57 12.69 7.62 -12.90 -0.10 12.59 16 15 O -0.54 -13.98 16.20 5.19 0.08 -13.89 16 16 C -0.25 -4.31 6.21 -36.79 -0.23 -4.54 16 17 C -0.07 -1.16 10.02 -40.44 -0.41 -1.57 16 18 C -0.15 -1.86 10.15 -41.41 -0.42 -2.28 16 19 C -0.28 -3.20 10.92 29.18 0.32 -2.89 16 20 S 0.22 2.90 17.89 -107.50 -1.92 0.97 16 21 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 22 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.05 0.78 7.50 -51.93 -0.39 0.39 16 26 H 0.06 0.92 5.11 -27.35 -0.14 0.78 16 27 H 0.10 1.76 7.12 -51.93 -0.37 1.39 16 28 H 0.15 2.28 8.06 -52.48 -0.42 1.86 16 29 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 264.99 15.07 3.99 3.99 Total: -1.00 -30.79 264.99 -6.50 -37.29 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -3.19 Total: -0.01 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.58 Total: -6.55 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.14 Total: -37.72 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.08 Total: -13.89 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.92 Total: 0.97 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.79 -6.50 -37.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094057.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.086 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds