Wall clock time and date at job start Sun Mar 29 2020 22:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47175 * 2 1 4 4 C 1.50698 * 109.47400 * 120.00536 * 2 1 3 5 5 H 1.07997 * 120.00102 * 119.99835 * 4 2 1 6 6 C 1.37882 * 119.99878 * 300.00006 * 4 2 1 7 7 N 1.31511 * 119.99753 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00067 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46997 * 59.99466 * 8 6 4 10 10 H 1.48497 * 109.47120 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46813 * 299.99996 * 8 6 4 12 12 N 1.46503 * 109.47031 * 240.00482 * 2 1 3 13 13 C 1.46507 * 119.99904 * 300.00042 * 12 2 1 14 14 C 1.34775 * 120.00209 * 119.99754 * 12 2 1 15 15 O 1.21702 * 120.00199 * 6.07335 * 14 12 2 16 16 C 1.46580 * 120.00188 * 186.06853 * 14 12 2 17 17 C 1.36650 * 125.46207 * 186.83119 * 16 14 12 18 18 C 1.37468 * 113.30146 * 179.97438 * 17 16 14 19 19 C 1.33818 * 115.10182 * 359.97438 * 18 17 16 20 20 S 1.70626 * 110.95077 * 359.76427 * 19 18 17 21 21 H 1.08996 * 109.46623 * 299.99406 * 1 2 3 22 22 H 1.09000 * 109.47175 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47241 * 59.99361 * 1 2 3 24 24 H 0.97000 * 119.99962 * 180.02562 * 7 6 4 25 25 H 1.08994 * 109.46975 * 95.95892 * 13 12 2 26 26 H 1.09004 * 109.46775 * 215.96143 * 13 12 2 27 27 H 1.08997 * 109.46714 * 335.96302 * 13 12 2 28 28 H 1.08004 * 123.34914 * 359.93204 * 17 16 14 29 29 H 1.07999 * 122.45084 * 180.02562 * 18 17 16 30 30 H 1.08001 * 124.52518 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3226 -1.1198 4.0079 9 1 3.8076 -1.1192 4.0075 10 1 1.8281 -0.4196 5.2204 11 1 1.8282 -2.5201 4.0079 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.1785 1.0926 -1.8384 16 6 3.1717 -0.6818 -3.3434 17 6 4.0535 -0.1793 -4.2584 18 6 4.2249 -0.9938 -5.3525 19 6 3.5098 -2.1247 -5.3360 20 16 2.5703 -2.2318 -3.9157 21 1 -0.3632 0.5137 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 0.7096 1.1616 3.4844 25 1 0.7980 -2.1449 -2.0875 26 1 2.5056 -2.6082 -1.8923 27 1 1.4262 -2.5697 -0.4773 28 1 4.5644 0.7641 -4.1347 29 1 4.8889 -0.7399 -6.1656 30 1 3.5282 -2.8721 -6.1154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094057.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:07 Heat of formation + Delta-G solvation = -17.123312 kcal Electronic energy + Delta-G solvation = -14929.327206 eV Core-core repulsion = 12429.876018 eV Total energy + Delta-G solvation = -2499.451188 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.82996 -38.47476 -37.09922 -34.90345 -31.99952 -30.09357 -27.92575 -27.32147 -25.88115 -23.39011 -21.16766 -19.98158 -18.94039 -18.37484 -17.43551 -16.64455 -16.57501 -16.28396 -15.52926 -14.64117 -14.41798 -14.12524 -13.95157 -13.70128 -13.58303 -13.43977 -12.95952 -12.93893 -12.77199 -12.67133 -12.22601 -12.13255 -11.44092 -11.24562 -10.92679 -10.53035 -9.89726 -9.48613 -9.26188 -8.15804 -6.32893 -0.38742 0.58219 1.10930 1.41861 1.44858 1.50785 1.52749 2.19385 2.30468 2.45735 3.12321 3.69483 4.18955 4.21526 4.43625 4.52326 4.61360 4.72324 4.87229 4.90000 5.01065 5.09725 5.29136 5.43495 5.45376 5.55590 5.63558 5.99704 6.13033 6.67400 6.73647 7.21045 7.40398 8.88802 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.041718 B = 0.006610 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.010313 B = 4235.253390 C = 4342.731986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.262 3.738 3 H 0.009 0.991 4 C -0.543 4.543 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.967 3.033 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.259 1.259 12 N -0.594 5.594 13 C 0.065 3.935 14 C 0.563 3.437 15 O -0.599 6.599 16 C -0.304 4.304 17 C -0.069 4.069 18 C -0.159 4.159 19 C -0.247 4.247 20 S 0.271 5.729 21 H 0.071 0.929 22 H 0.051 0.949 23 H 0.020 0.980 24 H 0.266 0.734 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.137 0.863 29 H 0.166 0.834 30 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -10.815 -14.274 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.160 3.840 3 H 0.027 0.973 4 C -0.581 4.581 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.792 3.208 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.184 1.184 12 N -0.323 5.323 13 C -0.079 4.079 14 C 0.352 3.648 15 O -0.484 6.484 16 C -0.424 4.424 17 C -0.103 4.103 18 C -0.188 4.188 19 C -0.384 4.384 20 S 0.539 5.461 21 H 0.089 0.911 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.155 0.845 29 H 0.184 0.816 30 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.896 -11.242 -13.450 17.552 hybrid contribution 1.371 1.339 0.440 1.966 sum 2.267 -9.903 -13.010 16.506 Atomic orbital electron populations 1.21887 0.96520 1.00503 1.00127 1.18630 0.91928 0.92174 0.81220 0.97309 1.21531 1.32235 1.13308 0.91051 0.91988 1.25749 0.94948 0.95621 1.02033 1.70012 1.37122 1.23755 1.24626 0.85479 0.78283 0.79116 0.77959 1.20496 1.20789 1.18360 1.48108 1.48631 1.13020 1.22558 1.22038 1.01261 0.80950 1.03625 1.17710 0.78464 0.85224 0.83353 1.90721 1.57245 1.21439 1.78982 1.24664 1.11657 1.04666 1.01368 1.20960 0.95779 1.00735 0.92863 1.20126 1.04182 0.94701 0.99826 1.26290 1.03491 1.03150 1.05494 1.83239 1.41469 1.12750 1.08600 0.91070 0.92975 0.96083 0.92509 0.90247 0.89899 0.88727 0.84507 0.81644 0.78241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 8.97 71.98 0.65 -5.78 16 2 C 0.26 14.06 2.62 44.24 0.12 14.18 16 3 H 0.01 0.57 6.91 -2.39 -0.02 0.56 16 4 C -0.54 -29.97 7.95 25.60 0.20 -29.76 16 5 H 0.06 3.31 7.43 -2.91 -0.02 3.28 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.92 -53.17 11.32 21.45 0.24 -52.93 16 8 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 N -0.59 -26.71 2.75 -831.61 -2.29 -28.99 16 13 C 0.07 2.14 7.76 127.77 0.99 3.13 16 14 C 0.56 26.00 7.62 86.42 0.66 26.66 16 15 O -0.60 -33.41 16.20 -4.35 -0.07 -33.48 16 16 C -0.30 -10.49 6.21 24.08 0.15 -10.34 16 17 C -0.07 -2.08 10.02 21.72 0.22 -1.86 16 18 C -0.16 -3.40 10.15 21.08 0.21 -3.19 16 19 C -0.25 -4.48 10.92 66.81 0.73 -3.75 16 20 S 0.27 6.14 17.89 -56.49 -1.01 5.13 16 21 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 22 H 0.05 2.26 7.67 -2.39 -0.02 2.24 16 23 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 25 H 0.08 2.17 7.50 -2.39 -0.02 2.15 16 26 H 0.08 2.32 5.11 -18.01 -0.09 2.23 16 27 H 0.09 3.21 7.12 -2.39 -0.02 3.19 16 28 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -71.29 264.99 4.34 -66.95 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.06 Total: 7.52 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 4.38 Total: -9.36 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -2.05 Total: -81.93 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.07 Total: -33.48 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.01 Total: 5.13 kcal Total: -71.29 4.34 -66.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094057.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.825 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds