Wall clock time and date at job start Sun Mar 29 2020 22:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47405 * 2 1 4 4 C 1.50700 * 109.46848 * 239.99709 * 2 1 3 5 5 H 1.08000 * 120.00532 * 240.00248 * 4 2 1 6 6 C 1.37882 * 119.99783 * 60.00140 * 4 2 1 7 7 N 1.31507 * 120.00042 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99747 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46833 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47365 * 299.99869 * 8 6 4 11 11 H 1.48503 * 109.47011 * 60.00482 * 8 6 4 12 12 N 1.46505 * 109.47114 * 120.00395 * 2 1 3 13 13 C 1.46492 * 120.00083 * 59.99431 * 12 2 1 14 14 C 1.34774 * 119.99349 * 239.99572 * 12 2 1 15 15 O 1.21635 * 120.00699 * 356.11756 * 14 12 2 16 16 C 1.47197 * 119.99543 * 176.11328 * 14 12 2 17 17 C 1.44425 * 123.46166 * 34.43066 * 16 14 12 18 18 C 1.32765 * 113.07975 * 179.97438 * 17 16 14 19 19 S 1.75503 * 110.58225 * 359.97438 * 18 17 16 20 20 C 1.36011 * 123.45797 * 214.12981 * 16 14 12 21 21 H 1.09002 * 109.46656 * 300.00028 * 1 2 3 22 22 H 1.08999 * 109.47215 * 59.99801 * 1 2 3 23 23 H 1.08990 * 109.47525 * 180.02562 * 1 2 3 24 24 H 0.97002 * 120.00126 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47002 * 95.51703 * 13 12 2 26 26 H 1.09005 * 109.46976 * 215.51428 * 13 12 2 27 27 H 1.08996 * 109.47367 * 335.51173 * 13 12 2 28 28 H 1.08002 * 123.45662 * 359.95289 * 17 16 14 29 29 H 1.08004 * 124.70964 * 180.02562 * 18 17 16 30 30 H 1.08001 * 124.59386 * 0.02562 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1197 -4.0080 9 1 1.8267 -0.4201 -5.2204 10 1 3.8073 -1.1192 -4.0078 11 1 1.8277 -2.5199 -4.0081 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0832 15 8 3.1455 1.1062 1.8565 16 6 3.2132 -0.7023 3.3266 17 6 3.5017 -2.1147 3.4147 18 6 3.8627 -2.4971 4.6338 19 16 3.8647 -1.1298 5.7340 20 6 3.3751 -0.0502 4.5092 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0275 0.0005 24 1 0.7088 1.1613 -3.4844 25 1 2.4635 -2.7355 1.0581 26 1 1.5278 -2.2617 2.4962 27 1 0.7384 -2.3259 0.9022 28 1 3.4307 -2.7904 2.5752 29 1 4.1202 -3.5090 4.9099 30 1 3.2137 1.0079 4.6531 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094064.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:12 Heat of formation + Delta-G solvation = 4.472396 kcal Electronic energy + Delta-G solvation = -14953.020698 eV Core-core repulsion = 12454.505971 eV Total energy + Delta-G solvation = -2498.514728 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.42638 -36.57931 -35.33807 -32.77516 -29.75911 -29.37501 -26.20713 -25.22987 -24.65736 -21.49774 -19.82548 -18.48302 -17.54105 -16.47673 -15.66771 -15.50615 -14.68189 -14.46568 -13.77396 -13.11206 -12.86750 -12.75609 -12.54805 -12.44479 -11.95731 -11.56932 -11.40118 -11.05171 -10.92162 -10.71129 -10.69003 -10.26014 -10.15695 -9.19122 -9.05714 -8.91635 -8.42640 -8.27376 -7.58201 -6.06181 -4.14214 1.01621 1.65192 1.99443 2.32838 3.28818 3.33864 3.35835 3.77799 4.05453 4.41747 4.89372 5.19826 5.24948 5.41294 5.56995 5.78984 5.96459 6.04478 6.19230 6.30322 6.38368 6.76797 6.83299 7.05583 7.44290 7.52500 7.71898 8.01846 8.20059 8.52139 8.83572 9.04489 9.52109 10.99174 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.044470 B = 0.006145 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.492643 B = 4555.736767 C = 4755.040660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.584 5.584 13 C 0.084 3.916 14 C 0.563 3.437 15 O -0.549 6.549 16 C -0.142 4.142 17 C -0.109 4.109 18 C -0.237 4.237 19 S 0.150 5.850 20 C -0.193 4.193 21 H 0.011 0.989 22 H 0.095 0.905 23 H 0.031 0.969 24 H 0.264 0.736 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.157 0.843 29 H 0.166 0.834 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -7.535 13.730 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.060 4.060 14 C 0.348 3.652 15 O -0.428 6.428 16 C -0.159 4.159 17 C -0.139 4.139 18 C -0.372 4.372 19 S 0.414 5.586 20 C -0.331 4.331 21 H 0.031 0.969 22 H 0.113 0.887 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.175 0.825 29 H 0.183 0.817 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.815 -6.659 14.952 16.608 hybrid contribution -0.038 -0.713 -2.459 2.561 sum 2.777 -7.372 12.493 14.769 Atomic orbital electron populations 1.22105 0.98109 0.99439 1.00901 1.18985 0.90881 0.94571 0.79834 0.91817 1.21276 1.31877 1.12999 0.90253 0.92315 1.24893 0.94947 0.94981 0.98954 1.69865 1.36344 1.22569 1.23872 0.86541 0.79254 0.79540 0.81957 1.21154 1.20245 1.20241 1.48117 1.48392 1.11623 1.23250 1.21859 1.01163 0.83125 0.99877 1.17626 0.79295 0.85778 0.82528 1.90752 1.56361 1.18306 1.77430 1.20603 1.06567 0.93482 0.95283 1.21707 0.99742 0.94309 0.98130 1.25422 1.11536 1.02954 0.97295 1.82839 1.65738 0.97543 1.12496 1.25424 1.05774 1.04948 0.96910 0.96949 0.88702 0.95032 0.92617 0.93327 0.92360 0.90663 0.82527 0.81686 0.81233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.96 37.16 0.33 -3.22 16 2 C 0.26 6.70 2.63 -69.08 -0.18 6.52 16 3 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -14.37 8.37 -34.44 -0.29 -14.66 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.58 -12.91 2.75 -176.62 -0.49 -13.40 16 13 C 0.08 1.44 8.10 59.84 0.48 1.93 16 14 C 0.56 12.48 7.50 -12.62 -0.09 12.39 16 15 O -0.55 -14.34 16.29 5.25 0.09 -14.25 16 16 C -0.14 -2.45 5.36 -104.63 -0.56 -3.01 16 17 C -0.11 -1.52 8.04 -39.02 -0.31 -1.83 16 18 C -0.24 -2.66 11.12 28.86 0.32 -2.34 16 19 S 0.15 1.65 23.02 -107.50 -2.48 -0.82 16 20 C -0.19 -2.87 10.68 29.93 0.32 -2.55 16 21 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 22 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 23 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.05 0.78 6.98 -51.93 -0.36 0.41 16 26 H 0.06 0.85 5.78 -51.93 -0.30 0.55 16 27 H 0.07 1.31 6.44 -51.93 -0.33 0.97 16 28 H 0.16 2.02 5.55 -52.49 -0.29 1.73 16 29 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 264.89 15.07 3.99 3.99 Total: -1.00 -31.45 264.89 -6.47 -37.92 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -3.11 Total: 0.18 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.08 Total: -5.09 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.14 Total: -38.07 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.25 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.48 Total: -0.82 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.45 -6.47 -37.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094064.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.391 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds