Wall clock time and date at job start Sun Mar 29 2020 22:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47405 * 2 1 4 4 C 1.50700 * 109.46848 * 239.99709 * 2 1 3 5 5 H 1.08000 * 120.00532 * 240.00248 * 4 2 1 6 6 C 1.37882 * 119.99783 * 60.00140 * 4 2 1 7 7 N 1.31507 * 120.00042 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99747 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46833 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47365 * 299.99869 * 8 6 4 11 11 H 1.48503 * 109.47011 * 60.00482 * 8 6 4 12 12 N 1.46505 * 109.47114 * 120.00395 * 2 1 3 13 13 C 1.46492 * 120.00083 * 59.99431 * 12 2 1 14 14 C 1.34774 * 119.99349 * 239.99572 * 12 2 1 15 15 O 1.21635 * 120.00699 * 356.11756 * 14 12 2 16 16 C 1.47197 * 119.99543 * 176.11328 * 14 12 2 17 17 C 1.44425 * 123.46166 * 34.43066 * 16 14 12 18 18 C 1.32765 * 113.07975 * 179.97438 * 17 16 14 19 19 S 1.75503 * 110.58225 * 359.97438 * 18 17 16 20 20 C 1.36011 * 123.45797 * 214.12981 * 16 14 12 21 21 H 1.09002 * 109.46656 * 300.00028 * 1 2 3 22 22 H 1.08999 * 109.47215 * 59.99801 * 1 2 3 23 23 H 1.08990 * 109.47525 * 180.02562 * 1 2 3 24 24 H 0.97002 * 120.00126 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47002 * 95.51703 * 13 12 2 26 26 H 1.09005 * 109.46976 * 215.51428 * 13 12 2 27 27 H 1.08996 * 109.47367 * 335.51173 * 13 12 2 28 28 H 1.08002 * 123.45662 * 359.95289 * 17 16 14 29 29 H 1.08004 * 124.70964 * 180.02562 * 18 17 16 30 30 H 1.08001 * 124.59386 * 0.02562 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1197 -4.0080 9 1 1.8267 -0.4201 -5.2204 10 1 3.8073 -1.1192 -4.0078 11 1 1.8277 -2.5199 -4.0081 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0357 2.0832 15 8 3.1455 1.1062 1.8565 16 6 3.2132 -0.7023 3.3266 17 6 3.5017 -2.1147 3.4147 18 6 3.8627 -2.4971 4.6338 19 16 3.8647 -1.1298 5.7340 20 6 3.3751 -0.0502 4.5092 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0275 0.0005 24 1 0.7088 1.1613 -3.4844 25 1 2.4635 -2.7355 1.0581 26 1 1.5278 -2.2617 2.4962 27 1 0.7384 -2.3259 0.9022 28 1 3.4307 -2.7904 2.5752 29 1 4.1202 -3.5090 4.9099 30 1 3.2137 1.0079 4.6531 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094064.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:12 Heat of formation + Delta-G solvation = -16.077196 kcal Electronic energy + Delta-G solvation = -14953.911795 eV Core-core repulsion = 12454.505971 eV Total energy + Delta-G solvation = -2499.405825 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.01715 -37.85898 -37.18224 -34.74906 -31.50838 -30.65553 -27.73163 -27.31063 -26.05657 -23.01994 -21.31483 -19.89021 -18.77135 -18.46431 -17.42851 -16.93907 -16.46580 -16.06295 -15.28036 -14.57265 -14.50912 -14.09112 -13.79998 -13.77470 -13.51611 -13.26316 -12.98452 -12.86809 -12.75255 -12.57263 -12.19503 -12.14130 -11.79252 -11.21595 -10.81102 -10.52492 -9.95998 -9.41719 -9.22123 -8.15361 -6.32624 -0.09745 0.67488 0.98536 1.15856 1.41419 1.44203 1.51725 2.21853 2.33586 2.54439 3.12238 3.79324 3.95569 4.33561 4.46145 4.52927 4.67612 4.75443 4.85627 4.90008 5.00443 5.05399 5.17574 5.33157 5.43440 5.61222 5.64656 6.00868 6.13649 6.73932 6.76633 7.26588 7.43263 8.89060 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.044470 B = 0.006145 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.492643 B = 4555.736767 C = 4755.040660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.007 0.993 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.968 3.032 9 H -0.283 1.283 10 H -0.278 1.278 11 H -0.260 1.260 12 N -0.590 5.590 13 C 0.082 3.918 14 C 0.552 3.448 15 O -0.608 6.608 16 C -0.174 4.174 17 C -0.129 4.129 18 C -0.220 4.220 19 S 0.240 5.760 20 C -0.213 4.213 21 H 0.019 0.981 22 H 0.070 0.930 23 H 0.050 0.950 24 H 0.265 0.735 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.164 0.836 29 H 0.206 0.794 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 -10.555 15.407 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.025 0.975 4 C -0.579 4.579 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.208 1.208 10 H -0.204 1.204 11 H -0.185 1.185 12 N -0.319 5.319 13 C -0.060 4.060 14 C 0.340 3.660 15 O -0.493 6.493 16 C -0.192 4.192 17 C -0.157 4.157 18 C -0.355 4.355 19 S 0.505 5.495 20 C -0.351 4.351 21 H 0.038 0.962 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.091 0.909 28 H 0.181 0.819 29 H 0.223 0.777 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.474 -9.732 16.663 19.607 hybrid contribution -0.199 0.256 -2.808 2.827 sum 3.275 -9.476 13.854 17.101 Atomic orbital electron populations 1.21886 0.96831 1.00331 1.00010 1.18608 0.91812 0.92182 0.81621 0.97511 1.21532 1.32120 1.13161 0.91059 0.92065 1.25771 0.95009 0.95645 1.02095 1.70015 1.37246 1.23853 1.24577 0.85468 0.78326 0.79051 0.77918 1.20793 1.20375 1.18456 1.48114 1.48261 1.13450 1.22108 1.22113 1.01457 0.80311 1.02105 1.18463 0.78343 0.85279 0.83914 1.90696 1.58594 1.21045 1.78937 1.20337 1.09932 0.95444 0.93458 1.21619 1.01876 0.92469 0.99751 1.25927 1.08509 1.04865 0.96164 1.82590 1.62467 0.95151 1.09311 1.25668 1.05413 1.05809 0.98208 0.96224 0.91130 0.93067 0.92556 0.91815 0.89177 0.90886 0.81863 0.77688 0.82107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.96 71.98 0.64 -5.93 16 2 C 0.26 14.14 2.63 44.24 0.12 14.26 16 3 H 0.01 0.45 6.90 -2.39 -0.02 0.43 16 4 C -0.54 -30.20 8.37 25.60 0.21 -29.98 16 5 H 0.06 3.30 7.65 -2.91 -0.02 3.28 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -53.89 11.32 21.45 0.24 -53.65 16 8 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 12 N -0.59 -26.79 2.75 -830.94 -2.29 -29.08 16 13 C 0.08 2.74 8.10 127.77 1.03 3.77 16 14 C 0.55 25.51 7.50 86.60 0.65 26.16 16 15 O -0.61 -34.13 16.29 -4.14 -0.07 -34.19 16 16 C -0.17 -5.91 5.36 -19.87 -0.11 -6.02 16 17 C -0.13 -3.22 8.04 22.67 0.18 -3.04 16 18 C -0.22 -3.88 11.12 66.64 0.74 -3.14 16 19 S 0.24 4.33 23.02 -56.49 -1.30 3.03 16 20 C -0.21 -6.11 10.68 67.30 0.72 -5.40 16 21 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 23 H 0.05 2.28 6.66 -2.39 -0.02 2.27 16 24 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 25 H 0.06 1.93 6.98 -2.39 -0.02 1.91 16 26 H 0.09 2.43 5.78 -2.38 -0.01 2.42 16 27 H 0.07 2.44 6.44 -2.39 -0.02 2.42 16 28 H 0.16 3.75 5.55 -2.91 -0.02 3.74 16 29 H 0.21 1.99 8.06 -2.91 -0.02 1.96 16 30 H 0.16 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -72.75 264.89 4.41 -68.34 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.15 Total: 8.02 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.64 Total: -8.07 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -2.04 Total: -82.73 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.07 Total: -34.19 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.30 Total: 3.03 kcal Total: -72.75 4.41 -68.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094064.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.259 kcal (2) G-P(sol) polarization free energy of solvation -72.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds