Wall clock time and date at job start Sun Mar 29 2020 22:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47138 * 2 1 4 4 C 1.37442 * 123.35800 * 264.70465 * 3 2 1 5 5 C 1.33855 * 115.10486 * 179.80650 * 4 3 2 6 6 S 1.70621 * 110.96882 * 0.45215 * 5 4 3 7 7 C 1.36768 * 123.35778 * 85.00231 * 3 2 1 8 8 C 1.46451 * 125.46534 * 359.95129 * 7 3 2 9 9 O 1.21738 * 120.00183 * 6.87648 * 8 7 3 10 10 N 1.34775 * 120.00141 * 186.86711 * 8 7 3 11 11 C 1.46502 * 120.00321 * 185.93308 * 10 8 7 12 12 C 1.36892 * 119.99785 * 5.93733 * 10 8 7 13 13 H 1.07998 * 120.00070 * 42.44194 * 12 10 8 14 14 C 1.39000 * 119.99939 * 222.43158 * 12 10 8 15 15 N 1.31399 * 120.00302 * 8.21794 * 14 12 10 16 16 Si 1.86802 * 120.00002 * 188.21745 * 14 12 10 17 17 H 1.48497 * 109.47379 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47292 * 120.00460 * 16 14 12 19 19 H 1.48507 * 109.47033 * 240.00374 * 16 14 12 20 20 H 1.08994 * 109.47054 * 299.99898 * 1 2 3 21 21 H 1.08994 * 109.47058 * 60.00130 * 1 2 3 22 22 H 1.08999 * 109.46908 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47224 * 120.00547 * 2 1 3 24 24 H 1.09004 * 109.47151 * 240.00074 * 2 1 3 25 25 H 1.07998 * 122.45151 * 0.02562 * 4 3 2 26 26 H 1.08000 * 124.51775 * 180.19613 * 5 4 3 27 27 H 1.09000 * 109.46931 * 86.23376 * 11 10 8 28 28 H 1.08997 * 109.47044 * 206.23284 * 11 10 8 29 29 H 1.09002 * 109.46898 * 326.23453 * 11 10 8 30 30 H 0.96998 * 120.00692 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3841 2.0980 -1.1431 5 6 2.8052 3.3542 -0.9521 6 16 2.7934 3.7567 0.7059 7 6 2.1892 2.1630 1.1380 8 6 1.8997 1.7042 2.4983 9 8 1.6032 0.5405 2.6981 10 7 1.9618 2.5702 3.5292 11 6 1.8007 2.0869 4.9027 12 6 2.1754 3.9015 3.2927 13 1 1.6621 4.3949 2.4806 14 6 3.0528 4.6184 4.0979 15 7 3.7976 3.9905 4.9796 16 14 3.1731 6.4746 3.9264 17 1 2.2362 6.9361 2.8708 18 1 2.8171 7.1152 5.2180 19 1 4.5615 6.8485 3.5546 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 2.3220 1.6506 -2.1241 26 1 3.1152 4.0224 -1.7419 27 1 2.7650 1.7533 5.2860 28 1 1.4200 2.8934 5.5293 29 1 1.0972 1.2544 4.9147 30 1 4.4101 4.4906 5.5413 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069527579.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:47 Heat of formation + Delta-G solvation = -27.708352 kcal Electronic energy + Delta-G solvation = -15259.010584 eV Core-core repulsion = 12759.100394 eV Total energy + Delta-G solvation = -2499.910190 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.58069 -38.72673 -36.62860 -33.68934 -33.36473 -30.57117 -28.14656 -26.92036 -25.36648 -23.06765 -21.81901 -20.23462 -18.87359 -18.08498 -16.91553 -16.39824 -16.10481 -15.87175 -15.48832 -14.86774 -14.57776 -14.26490 -13.87097 -13.46968 -13.27758 -13.13933 -13.06934 -12.92828 -12.73017 -12.49299 -12.14711 -11.97954 -11.76068 -11.38504 -10.87144 -10.41686 -9.66001 -9.37434 -9.03258 -8.41181 -6.26359 -0.08738 1.00126 1.37544 1.45393 1.55652 1.59311 1.71267 2.23465 2.50994 2.98076 3.06095 4.10353 4.26543 4.38834 4.53688 4.60698 4.69188 4.76520 4.84956 4.96019 5.01193 5.15866 5.20591 5.30140 5.31228 5.41239 5.70502 5.78594 5.91899 6.28759 6.98184 7.46141 7.89979 8.61689 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.010890 C = 0.008284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.581694 B = 2570.454489 C = 3379.062869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.066 4.066 3 C -0.060 4.060 4 C -0.156 4.156 5 C -0.292 4.292 6 S 0.262 5.738 7 C -0.273 4.273 8 C 0.524 3.476 9 O -0.618 6.618 10 N -0.456 5.456 11 C 0.127 3.873 12 C -0.360 4.360 13 H 0.106 0.894 14 C 0.024 3.976 15 N -0.881 5.881 16 Si 0.965 3.035 17 H -0.244 1.244 18 H -0.271 1.271 19 H -0.268 1.268 20 H 0.024 0.976 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.156 0.844 26 H 0.185 0.815 27 H 0.037 0.963 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 2.171 -9.040 9.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 C -0.076 4.076 4 C -0.187 4.187 5 C -0.429 4.429 6 S 0.536 5.464 7 C -0.394 4.394 8 C 0.315 3.685 9 O -0.507 6.507 10 N -0.174 5.174 11 C -0.016 4.016 12 C -0.492 4.492 13 H 0.123 0.877 14 C -0.184 4.184 15 N -0.515 5.515 16 Si 0.786 3.214 17 H -0.167 1.167 18 H -0.197 1.197 19 H -0.193 1.193 20 H 0.043 0.957 21 H 0.082 0.918 22 H 0.088 0.912 23 H 0.080 0.920 24 H 0.106 0.894 25 H 0.174 0.826 26 H 0.202 0.798 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.304 3.007 -7.981 8.627 hybrid contribution -0.060 -0.582 -0.264 0.642 sum -1.364 2.425 -8.245 8.702 Atomic orbital electron populations 1.21511 0.94323 1.01836 1.00641 1.20305 0.96667 0.90932 1.02632 1.19714 0.99007 0.97804 0.91074 1.19884 1.05096 0.94651 0.99042 1.26553 1.07417 1.01901 1.07065 1.84172 1.57809 1.10264 0.94164 1.24458 1.16766 1.01136 0.97009 1.17690 0.81247 0.84809 0.84737 1.90562 1.55942 1.18539 1.85689 1.43489 1.61747 1.07250 1.04904 1.21152 0.99278 0.97785 0.83431 1.19748 1.26433 0.84330 1.18719 0.87695 1.26379 0.92600 1.04630 0.94784 1.70006 1.21678 1.38543 1.21242 0.85268 0.79499 0.76960 0.79651 1.16713 1.19651 1.19315 0.95698 0.91774 0.91201 0.91959 0.89368 0.82630 0.79800 0.94397 0.92250 0.93816 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.85 71.98 0.71 -3.39 16 2 C -0.07 -2.37 5.55 29.85 0.17 -2.20 16 3 C -0.06 -2.34 5.16 -20.40 -0.11 -2.44 16 4 C -0.16 -5.03 9.96 21.08 0.21 -4.82 16 5 C -0.29 -9.15 10.92 66.82 0.73 -8.42 16 6 S 0.26 10.23 18.54 -56.49 -1.05 9.18 16 7 C -0.27 -12.50 6.26 24.07 0.15 -12.35 16 8 C 0.52 27.56 7.57 86.38 0.65 28.21 16 9 O -0.62 -34.11 13.70 -4.47 -0.06 -34.17 16 10 N -0.46 -24.04 2.90 -663.70 -1.93 -25.96 16 11 C 0.13 6.34 8.88 127.77 1.13 7.47 16 12 C -0.36 -17.96 6.71 84.09 0.56 -17.40 16 13 H 0.11 5.02 5.67 -12.79 -0.07 4.95 16 14 C 0.02 1.14 5.20 84.94 0.44 1.58 16 15 N -0.88 -45.41 11.84 21.67 0.26 -45.15 16 16 Si 0.97 36.91 29.56 68.60 2.03 38.94 16 17 H -0.24 -8.70 7.11 99.48 0.71 -8.00 16 18 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 20 H 0.02 0.95 7.94 -2.39 -0.02 0.93 16 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.06 2.65 6.19 -2.39 -0.01 2.64 16 24 H 0.09 2.53 8.12 -2.38 -0.02 2.51 16 25 H 0.16 3.91 8.06 -2.91 -0.02 3.88 16 26 H 0.18 4.35 8.06 -2.91 -0.02 4.32 16 27 H 0.04 1.98 7.65 -2.39 -0.02 1.96 16 28 H 0.06 2.85 7.89 -2.39 -0.02 2.83 16 29 H 0.04 2.09 7.46 -2.39 -0.02 2.08 16 30 H 0.28 13.36 8.31 -92.71 -0.77 12.59 16 Total: -1.00 -60.31 265.54 4.99 -55.32 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.08 Total: 15.61 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 4.65 Total: -13.76 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.67 Total: -71.12 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.06 Total: -34.17 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.94 kcal Atomic # 16 Polarization: 10.23 SS G_CDS: -1.05 Total: 9.18 kcal Total: -60.31 4.99 -55.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069527579.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.609 kcal (2) G-P(sol) polarization free energy of solvation -60.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds