Wall clock time and date at job start Sun Mar 29 2020 22:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32765 * 124.70726 * 2 1 4 4 C 1.44434 * 113.08936 * 180.24325 * 3 2 1 5 5 C 1.47110 * 123.46854 * 179.69388 * 4 3 2 6 6 O 1.21665 * 120.00183 * 234.21631 * 5 4 3 7 7 N 1.34780 * 120.00294 * 54.21977 * 5 4 3 8 8 C 1.46497 * 119.99912 * 5.78518 * 7 5 4 9 9 C 1.36976 * 119.99914 * 185.78903 * 7 5 4 10 10 H 1.07996 * 120.00571 * 5.33056 * 9 7 5 11 11 C 1.38975 * 119.99440 * 185.32856 * 9 7 5 12 12 N 1.31415 * 120.00246 * 5.34243 * 11 9 7 13 13 Si 1.86799 * 119.99584 * 185.33711 * 11 9 7 14 14 H 1.48506 * 109.47080 * 90.00466 * 13 11 9 15 15 H 1.48497 * 109.47152 * 210.00155 * 13 11 9 16 16 H 1.48498 * 109.47352 * 330.00291 * 13 11 9 17 17 C 1.36091 * 113.06034 * 359.50518 * 4 3 2 18 18 C 1.50701 * 124.60047 * 180.22184 * 17 4 3 19 19 S 1.70447 * 110.80684 * 0.47734 * 17 4 3 20 20 H 1.08997 * 109.46990 * 90.00145 * 1 2 3 21 21 H 1.08998 * 109.47548 * 210.00304 * 1 2 3 22 22 H 1.09000 * 109.47013 * 330.00665 * 1 2 3 23 23 H 1.08008 * 123.44747 * 359.97438 * 3 2 1 24 24 H 1.09001 * 109.47256 * 355.09140 * 8 7 5 25 25 H 1.09001 * 109.47416 * 115.09085 * 8 7 5 26 26 H 1.08996 * 109.47392 * 235.09516 * 8 7 5 27 27 H 0.97002 * 119.99824 * 179.97438 * 12 11 9 28 28 H 1.08997 * 109.47499 * 180.31772 * 18 17 4 29 29 H 1.09000 * 109.46641 * 300.32045 * 18 17 4 30 30 H 1.08993 * 109.46949 * 60.31339 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2629 1.0914 0.0000 4 6 3.6777 0.8006 -0.0056 5 6 4.7194 1.8392 -0.0133 6 8 5.5813 1.8300 -0.8720 7 7 4.7192 2.8010 0.9309 8 6 3.7603 2.7414 2.0369 9 6 5.6154 3.8342 0.8563 10 1 6.2638 3.9257 -0.0025 11 6 5.6903 4.7647 1.8859 12 7 4.9777 4.5960 2.9771 13 14 6.8040 6.2550 1.7186 14 1 6.0466 7.3718 1.0985 15 1 7.2834 6.6679 3.0620 16 1 7.9672 5.9101 0.8623 17 6 3.9477 -0.5333 0.0010 18 6 5.3333 -1.1259 0.0021 19 16 2.5062 -1.4428 0.0008 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.8610 2.0939 -0.0004 24 1 3.0782 1.9055 1.8818 25 1 4.2966 2.6033 2.9757 26 1 3.1926 3.6710 2.0761 27 1 5.0302 5.2453 3.6958 28 1 5.2633 -2.2136 0.0023 29 1 5.8700 -0.7964 -0.8875 30 1 5.8687 -0.7961 0.8924 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069529306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:40 Heat of formation + Delta-G solvation = 1.061286 kcal Electronic energy + Delta-G solvation = -14978.001890 eV Core-core repulsion = 12479.339246 eV Total energy + Delta-G solvation = -2498.662644 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.91905 -36.49393 -34.69366 -32.63278 -31.54088 -29.05032 -26.48260 -25.31871 -23.97347 -22.68555 -19.76484 -18.06972 -16.91289 -16.61230 -15.67220 -14.74768 -14.26529 -13.81568 -13.73369 -13.54716 -12.99288 -12.84734 -12.76228 -12.36867 -11.74414 -11.70088 -11.34235 -11.24807 -11.09610 -10.96183 -10.72620 -10.53077 -10.37090 -10.15382 -9.07201 -8.45746 -8.17346 -7.87317 -7.75532 -6.26345 -3.81394 1.38206 1.92696 2.33606 2.77408 3.17658 3.23247 3.29492 4.05777 4.12743 4.94399 5.09947 5.22184 5.34949 5.40912 5.61293 5.63211 5.88038 5.99212 6.04304 6.07578 6.41014 6.46057 6.49577 6.65512 6.87303 7.10792 7.42562 7.54516 8.06438 8.48369 9.17282 9.43349 9.99868 10.67001 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037122 B = 0.007199 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.093615 B = 3888.235951 C = 4313.273633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.209 4.209 3 C -0.100 4.100 4 C -0.114 4.114 5 C 0.491 3.509 6 O -0.592 6.592 7 N -0.434 5.434 8 C 0.112 3.888 9 C -0.298 4.298 10 H 0.106 0.894 11 C 0.026 3.974 12 N -0.884 5.884 13 Si 0.933 3.067 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.269 1.269 17 C -0.182 4.182 18 C -0.076 4.076 19 S 0.126 5.874 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.143 0.857 24 H 0.031 0.969 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.266 0.734 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.851 -8.580 -1.164 11.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.326 4.326 3 C -0.130 4.130 4 C -0.130 4.130 5 C 0.278 3.722 6 O -0.479 6.479 7 N -0.150 5.150 8 C -0.031 4.031 9 C -0.426 4.426 10 H 0.123 0.877 11 C -0.176 4.176 12 N -0.525 5.525 13 Si 0.760 3.240 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.193 1.193 17 C -0.301 4.301 18 C -0.135 4.135 19 S 0.391 5.609 20 H 0.088 0.912 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.161 0.839 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.762 -9.969 -1.359 12.708 hybrid contribution 0.746 2.416 0.197 2.537 sum -7.016 -7.553 -1.162 10.374 Atomic orbital electron populations 1.20262 0.88087 1.02787 1.02294 1.24087 0.99682 0.95953 1.12834 1.21196 0.91359 0.99091 1.01369 1.20377 0.93908 0.93506 1.05197 1.17193 0.86671 0.82920 0.85455 1.90607 1.40190 1.76658 1.40467 1.43666 1.30005 1.20205 1.21162 1.21863 0.91663 0.99054 0.90544 1.19864 1.15696 1.01320 1.05687 0.87659 1.25366 0.97968 0.99601 0.94709 1.70172 1.40450 1.35845 1.05991 0.85809 0.79978 0.80655 0.77598 1.20292 1.20823 1.19312 1.24092 1.00564 0.96405 1.09008 1.20266 0.90486 0.98619 1.04084 1.82515 0.94651 1.09399 1.74345 0.91238 0.91688 0.90726 0.83916 0.95087 0.90770 0.91983 0.92288 0.92262 0.89727 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.34 36.00 0.37 -0.47 16 2 C -0.21 -3.18 6.44 -36.18 -0.23 -3.42 16 3 C -0.10 -1.83 8.07 -39.02 -0.31 -2.14 16 4 C -0.11 -2.44 4.68 -104.63 -0.49 -2.93 16 5 C 0.49 12.78 6.88 -12.66 -0.09 12.70 16 6 O -0.59 -17.22 16.16 5.22 0.08 -17.13 16 7 N -0.43 -11.62 3.02 -123.53 -0.37 -11.99 16 8 C 0.11 2.68 8.52 59.85 0.51 3.19 16 9 C -0.30 -8.46 9.55 -14.98 -0.14 -8.60 16 10 H 0.11 3.12 7.20 -52.49 -0.38 2.74 16 11 C 0.03 0.68 5.42 -17.46 -0.09 0.59 16 12 N -0.88 -23.41 9.53 55.50 0.53 -22.89 16 13 Si 0.93 20.88 29.56 -169.99 -5.02 15.86 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C -0.18 -3.41 6.34 -35.08 -0.22 -3.63 16 18 C -0.08 -1.31 9.61 36.01 0.35 -0.96 16 19 S 0.13 1.87 22.93 -107.50 -2.46 -0.60 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.14 2.52 8.04 -52.48 -0.42 2.10 16 24 H 0.03 0.65 4.83 -51.93 -0.25 0.40 16 25 H 0.07 1.88 6.88 -51.93 -0.36 1.52 16 26 H 0.06 1.52 7.25 -51.93 -0.38 1.14 16 27 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 29 H 0.08 1.57 7.87 -51.93 -0.41 1.16 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 269.44 15.07 4.06 4.06 Total: -1.00 -31.00 269.44 -6.98 -37.98 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -3.44 Total: 0.38 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.36 Total: -5.67 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.16 Total: -34.88 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.08 Total: -17.13 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.46 Total: -0.60 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.00 -6.98 -37.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069529306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.046 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds