Wall clock time and date at job start Sun Mar 29 2020 22:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32765 * 124.70726 * 2 1 4 4 C 1.44434 * 113.08936 * 180.24325 * 3 2 1 5 5 C 1.47110 * 123.46854 * 179.69388 * 4 3 2 6 6 O 1.21665 * 120.00183 * 234.21631 * 5 4 3 7 7 N 1.34780 * 120.00294 * 54.21977 * 5 4 3 8 8 C 1.46497 * 119.99912 * 5.78518 * 7 5 4 9 9 C 1.36976 * 119.99914 * 185.78903 * 7 5 4 10 10 H 1.07996 * 120.00571 * 5.33056 * 9 7 5 11 11 C 1.38975 * 119.99440 * 185.32856 * 9 7 5 12 12 N 1.31415 * 120.00246 * 5.34243 * 11 9 7 13 13 Si 1.86799 * 119.99584 * 185.33711 * 11 9 7 14 14 H 1.48506 * 109.47080 * 90.00466 * 13 11 9 15 15 H 1.48497 * 109.47152 * 210.00155 * 13 11 9 16 16 H 1.48498 * 109.47352 * 330.00291 * 13 11 9 17 17 C 1.36091 * 113.06034 * 359.50518 * 4 3 2 18 18 C 1.50701 * 124.60047 * 180.22184 * 17 4 3 19 19 S 1.70447 * 110.80684 * 0.47734 * 17 4 3 20 20 H 1.08997 * 109.46990 * 90.00145 * 1 2 3 21 21 H 1.08998 * 109.47548 * 210.00304 * 1 2 3 22 22 H 1.09000 * 109.47013 * 330.00665 * 1 2 3 23 23 H 1.08008 * 123.44747 * 359.97438 * 3 2 1 24 24 H 1.09001 * 109.47256 * 355.09140 * 8 7 5 25 25 H 1.09001 * 109.47416 * 115.09085 * 8 7 5 26 26 H 1.08996 * 109.47392 * 235.09516 * 8 7 5 27 27 H 0.97002 * 119.99824 * 179.97438 * 12 11 9 28 28 H 1.08997 * 109.47499 * 180.31772 * 18 17 4 29 29 H 1.09000 * 109.46641 * 300.32045 * 18 17 4 30 30 H 1.08993 * 109.46949 * 60.31339 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2629 1.0914 0.0000 4 6 3.6777 0.8006 -0.0056 5 6 4.7194 1.8392 -0.0133 6 8 5.5813 1.8300 -0.8720 7 7 4.7192 2.8010 0.9309 8 6 3.7603 2.7414 2.0369 9 6 5.6154 3.8342 0.8563 10 1 6.2638 3.9257 -0.0025 11 6 5.6903 4.7647 1.8859 12 7 4.9777 4.5960 2.9771 13 14 6.8040 6.2550 1.7186 14 1 6.0466 7.3718 1.0985 15 1 7.2834 6.6679 3.0620 16 1 7.9672 5.9101 0.8623 17 6 3.9477 -0.5333 0.0010 18 6 5.3333 -1.1259 0.0021 19 16 2.5062 -1.4428 0.0008 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.8610 2.0939 -0.0004 24 1 3.0782 1.9055 1.8818 25 1 4.2966 2.6033 2.9757 26 1 3.1926 3.6710 2.0761 27 1 5.0302 5.2453 3.6958 28 1 5.2633 -2.2136 0.0023 29 1 5.8700 -0.7964 -0.8875 30 1 5.8687 -0.7961 0.8924 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069529306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:40 Heat of formation + Delta-G solvation = -17.962165 kcal Electronic energy + Delta-G solvation = -14978.826809 eV Core-core repulsion = 12479.339246 eV Total energy + Delta-G solvation = -2499.487563 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.75013 -38.07332 -36.74826 -33.93565 -33.60529 -30.32744 -28.43875 -27.05920 -25.53963 -24.30357 -21.26908 -19.77771 -18.97785 -18.04877 -17.43705 -16.62118 -16.04730 -15.62629 -15.23724 -14.96589 -14.45750 -14.17248 -14.06929 -13.78586 -13.56280 -13.49450 -12.90826 -12.76853 -12.74847 -12.51118 -12.43412 -12.17290 -12.10953 -11.78949 -11.10242 -10.48410 -9.94855 -9.47312 -9.13058 -8.30094 -5.96600 -0.01391 0.65334 0.97205 1.22592 1.38189 1.43647 1.51884 2.15643 2.25213 3.08874 3.14185 3.80807 3.98056 4.21515 4.35102 4.55476 4.59190 4.61042 4.72972 4.82805 4.98401 5.08533 5.12581 5.16513 5.29712 5.38061 5.43410 5.49857 5.98504 6.42267 7.09201 7.40241 7.96511 8.61371 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037122 B = 0.007199 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.093615 B = 3888.235951 C = 4313.273633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.193 4.193 3 C -0.131 4.131 4 C -0.152 4.152 5 C 0.485 3.515 6 O -0.638 6.638 7 N -0.449 5.449 8 C 0.130 3.870 9 C -0.345 4.345 10 H 0.078 0.922 11 C -0.004 4.004 12 N -0.894 5.894 13 Si 0.998 3.002 14 H -0.266 1.266 15 H -0.267 1.267 16 H -0.275 1.275 17 C -0.202 4.202 18 C -0.076 4.076 19 S 0.221 5.779 20 H 0.087 0.913 21 H 0.089 0.911 22 H 0.083 0.917 23 H 0.139 0.861 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.274 0.726 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.847 -9.914 -0.619 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.310 4.310 3 C -0.160 4.160 4 C -0.169 4.169 5 C 0.274 3.726 6 O -0.528 6.528 7 N -0.165 5.165 8 C -0.013 4.013 9 C -0.472 4.472 10 H 0.096 0.904 11 C -0.206 4.206 12 N -0.533 5.533 13 Si 0.821 3.179 14 H -0.191 1.191 15 H -0.191 1.191 16 H -0.200 1.200 17 C -0.321 4.321 18 C -0.134 4.134 19 S 0.487 5.513 20 H 0.106 0.894 21 H 0.108 0.892 22 H 0.102 0.898 23 H 0.156 0.844 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.793 -11.317 -0.784 14.986 hybrid contribution 1.292 2.683 0.017 2.978 sum -8.501 -8.634 -0.767 12.141 Atomic orbital electron populations 1.20470 0.84723 1.04495 1.03970 1.24685 1.01886 0.95420 1.09006 1.21054 0.90052 1.00161 1.04752 1.20179 0.94224 0.93247 1.09267 1.17983 0.87030 0.83358 0.84269 1.90542 1.42352 1.77946 1.41943 1.43884 1.30314 1.20304 1.22019 1.21672 0.91104 0.99595 0.88898 1.19824 1.17472 1.03739 1.06214 0.90396 1.26165 0.98954 1.01553 0.93886 1.70259 1.40458 1.36525 1.06090 0.84864 0.77847 0.77099 0.78087 1.19150 1.19113 1.20007 1.24506 1.03318 0.96559 1.07755 1.20279 0.89794 1.01040 1.02326 1.82149 0.90739 1.06863 1.71516 0.89419 0.89248 0.89805 0.84353 0.92295 0.92567 0.93044 0.91540 0.88202 0.91913 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.34 71.24 0.74 -0.65 16 2 C -0.19 -5.26 6.44 24.51 0.16 -5.10 16 3 C -0.13 -4.68 8.07 22.67 0.18 -4.49 16 4 C -0.15 -6.62 4.68 -19.87 -0.09 -6.71 16 5 C 0.48 26.56 6.88 86.57 0.60 27.16 16 6 O -0.64 -39.49 16.16 -4.24 -0.07 -39.55 16 7 N -0.45 -25.22 3.02 -662.97 -2.00 -27.22 16 8 C 0.13 6.38 8.52 127.77 1.09 7.47 16 9 C -0.34 -20.59 9.55 84.07 0.80 -19.79 16 10 H 0.08 4.95 7.20 -2.91 -0.02 4.93 16 11 C 0.00 -0.23 5.42 84.93 0.46 0.23 16 12 N -0.89 -47.83 9.53 21.67 0.21 -47.62 16 13 Si 1.00 43.32 29.56 68.60 2.03 45.35 16 14 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 15 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 17 C -0.20 -7.39 6.34 25.19 0.16 -7.23 16 18 C -0.08 -2.61 9.61 71.24 0.68 -1.92 16 19 S 0.22 5.73 22.93 -56.49 -1.30 4.43 16 20 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.14 4.92 8.04 -2.91 -0.02 4.89 16 24 H 0.06 2.52 4.83 -2.39 -0.01 2.51 16 25 H 0.06 2.91 6.88 -2.39 -0.02 2.90 16 26 H 0.05 2.57 7.25 -2.39 -0.02 2.56 16 27 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 28 H 0.10 2.51 8.11 -2.39 -0.02 2.49 16 29 H 0.06 2.42 7.87 -2.39 -0.02 2.40 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -70.84 269.44 4.79 -66.05 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 1.14 Total: 9.61 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 4.78 Total: -11.05 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -1.80 Total: -74.84 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.07 Total: -39.55 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 5.73 SS G_CDS: -1.30 Total: 4.43 kcal Total: -70.84 4.79 -66.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069529306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.088 kcal (2) G-P(sol) polarization free energy of solvation -70.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds