Wall clock time and date at job start Sun Mar 29 2020 22:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48497 * 109.47246 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47191 * 300.00603 * 3 2 1 6 6 H 1.48511 * 109.46924 * 60.00153 * 3 2 1 7 7 C 1.38954 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99841 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99895 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99651 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99942 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99838 * 179.97438 * 10 9 7 13 13 O 1.42895 * 109.46892 * 179.97438 * 12 10 9 14 14 C 1.35951 * 116.99758 * 179.97438 * 13 12 10 15 15 C 1.38708 * 120.03040 * 0.28885 * 14 13 12 16 16 C 1.38147 * 119.96935 * 180.25012 * 15 14 13 17 17 C 1.38455 * 120.02958 * 359.46222 * 16 15 14 18 18 F 1.35101 * 119.97206 * 180.29906 * 17 16 15 19 19 C 1.38452 * 120.06193 * 0.28172 * 17 16 15 20 20 C 1.38156 * 120.03063 * 359.97438 * 19 17 16 21 21 H 0.97000 * 119.99858 * 359.97438 * 1 2 3 22 22 H 0.96993 * 120.00111 * 359.97438 * 9 7 2 23 23 H 1.09005 * 109.46403 * 60.00348 * 12 10 9 24 24 H 1.08995 * 109.47035 * 300.00415 * 12 10 9 25 25 H 1.07998 * 120.01328 * 0.02562 * 15 14 13 26 26 H 1.08002 * 119.98838 * 179.74746 * 16 15 14 27 27 H 1.07997 * 119.98751 * 179.97438 * 19 17 16 28 28 H 1.07999 * 120.02057 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3964 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2437 -4.8630 -0.0022 13 8 2.1723 -5.9491 -0.0027 14 6 1.6526 -7.2054 -0.0027 15 6 0.2776 -7.3878 -0.0083 16 6 -0.2491 -8.6649 -0.0031 17 6 0.5948 -9.7625 -0.0035 18 9 0.0785 -11.0110 -0.0045 19 6 1.9675 -9.5819 -0.0033 20 6 2.4970 -8.3058 -0.0031 21 1 -0.4850 0.8401 0.0004 22 1 0.3534 -2.3907 -0.0016 23 1 0.6174 -4.9205 -0.8925 24 1 0.6166 -4.9209 0.8875 25 1 -0.3809 -6.5318 -0.0131 26 1 -1.3197 -8.8073 -0.0033 27 1 2.6247 -10.4389 -0.0032 28 1 3.5678 -8.1652 -0.0034 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070266622.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:20 Heat of formation + Delta-G solvation = -95.449639 kcal Electronic energy + Delta-G solvation = -15767.043358 eV Core-core repulsion = 12697.982510 eV Total energy + Delta-G solvation = -3069.060848 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.86838 -40.09112 -38.25306 -36.81154 -34.04607 -31.49158 -31.28804 -29.72957 -27.88646 -24.73738 -23.12151 -22.15828 -19.58565 -18.36367 -18.07888 -17.30257 -16.64098 -15.97105 -15.67947 -15.49802 -14.77232 -14.69937 -14.09179 -13.74592 -13.59400 -13.46006 -13.00960 -12.67477 -12.10183 -11.99945 -11.64473 -11.18564 -10.90096 -10.72534 -10.41368 -10.33361 -9.64929 -9.27953 -8.55008 -8.12101 -8.08278 -6.53564 -3.95294 1.07373 1.17564 3.09538 3.11067 3.22789 3.31754 3.51467 3.70014 4.12399 4.24493 4.59185 4.68183 4.90786 5.01780 5.10282 5.21394 5.35074 5.52549 5.58720 5.79871 6.01237 6.04936 6.07448 6.21574 6.64236 7.43134 7.45177 7.91353 8.45272 9.04454 9.35883 9.86039 10.63794 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.073152 B = 0.004092 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.675202 B = 6841.364004 C = 7208.893692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.106 0.894 9 N -0.554 5.554 10 C 0.439 3.561 11 O -0.574 6.574 12 C 0.049 3.951 13 O -0.280 6.280 14 C 0.131 3.869 15 C -0.187 4.187 16 C -0.110 4.110 17 C 0.046 3.954 18 F -0.146 7.146 19 C -0.112 4.112 20 C -0.126 4.126 21 H 0.273 0.727 22 H 0.394 0.606 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.140 0.860 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 -14.232 -0.008 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.430 4.430 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.224 3.776 11 O -0.457 6.457 12 C -0.030 4.030 13 O -0.191 6.191 14 C 0.084 3.916 15 C -0.206 4.206 16 C -0.129 4.129 17 C 0.027 3.973 18 F -0.125 7.125 19 C -0.131 4.131 20 C -0.145 4.145 21 H 0.083 0.917 22 H 0.228 0.772 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.158 0.842 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.884 -14.036 -0.009 14.162 hybrid contribution -0.713 0.651 0.001 0.966 sum -2.597 -13.385 -0.008 13.635 Atomic orbital electron populations 1.69615 1.05996 1.28389 1.49876 1.25310 0.95704 0.99884 0.96901 0.85740 0.79742 0.80716 0.77815 1.19076 1.20611 1.20606 1.19780 0.93523 0.81750 1.47994 0.87573 1.41706 1.09292 1.04124 1.63995 1.19286 0.88337 0.84029 0.85941 1.90574 1.13484 1.86718 1.54966 1.22567 0.91923 0.86159 1.02343 1.86239 1.34653 1.10951 1.87284 1.19237 0.91783 0.85659 0.94902 1.21226 0.94266 0.98020 1.07047 1.20910 1.00213 0.91127 1.00672 1.17547 0.92026 0.79438 1.08303 1.91468 1.87453 1.39014 1.94538 1.20917 0.93299 0.97747 1.01154 1.20323 1.00588 0.89190 1.04372 0.91687 0.77241 0.90230 0.90218 0.84185 0.84614 0.84258 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.62 13.05 55.50 0.72 -22.89 15 2 C 0.02 0.63 5.50 -17.46 -0.10 0.54 15 3 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 15 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 6 H -0.28 -6.05 7.11 56.52 0.40 -5.64 15 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 15 8 H 0.11 3.04 7.16 -52.49 -0.38 2.67 15 9 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 15 10 C 0.44 10.33 7.86 -10.98 -0.09 10.25 15 11 O -0.57 -15.96 16.08 -14.36 -0.23 -16.19 15 12 C 0.05 0.85 5.22 36.01 0.19 1.04 15 13 O -0.28 -5.09 9.67 -39.49 -0.38 -5.47 15 14 C 0.13 1.92 6.69 -39.23 -0.26 1.66 15 15 C -0.19 -2.33 9.04 -39.44 -0.36 -2.68 15 16 C -0.11 -1.25 10.02 -39.53 -0.40 -1.65 15 17 C 0.05 0.55 7.30 -39.42 -0.29 0.26 15 18 F -0.15 -1.77 17.27 2.25 0.04 -1.73 15 19 C -0.11 -1.26 10.02 -39.53 -0.40 -1.66 15 20 C -0.13 -1.61 9.99 -39.44 -0.39 -2.01 15 21 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 22 H 0.39 9.03 7.90 -40.82 -0.32 8.71 15 23 H 0.08 1.17 7.65 -51.93 -0.40 0.78 15 24 H 0.08 1.17 7.67 -51.93 -0.40 0.78 15 25 H 0.14 1.52 6.30 -52.49 -0.33 1.19 15 26 H 0.14 1.23 8.06 -52.49 -0.42 0.81 15 27 H 0.14 1.21 8.06 -52.49 -0.42 0.79 15 28 H 0.14 1.68 8.06 -52.49 -0.42 1.25 15 LS Contribution 262.68 15.07 3.96 3.96 Total: -1.00 -31.08 262.68 -5.43 -36.51 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -2.23 Total: 6.64 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.23 Total: -2.60 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.67 Total: -36.57 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.61 Total: -21.66 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.08 -5.43 -36.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070266622.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.939 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds