Wall clock time and date at job start Sun Mar 29 2020 22:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48497 * 109.47246 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47191 * 300.00603 * 3 2 1 6 6 H 1.48511 * 109.46924 * 60.00153 * 3 2 1 7 7 C 1.38954 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99841 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99895 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99651 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99942 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99838 * 179.97438 * 10 9 7 13 13 O 1.42895 * 109.46892 * 179.97438 * 12 10 9 14 14 C 1.35951 * 116.99758 * 179.97438 * 13 12 10 15 15 C 1.38708 * 120.03040 * 0.28885 * 14 13 12 16 16 C 1.38147 * 119.96935 * 180.25012 * 15 14 13 17 17 C 1.38455 * 120.02958 * 359.46222 * 16 15 14 18 18 F 1.35101 * 119.97206 * 180.29906 * 17 16 15 19 19 C 1.38452 * 120.06193 * 0.28172 * 17 16 15 20 20 C 1.38156 * 120.03063 * 359.97438 * 19 17 16 21 21 H 0.97000 * 119.99858 * 359.97438 * 1 2 3 22 22 H 0.96993 * 120.00111 * 359.97438 * 9 7 2 23 23 H 1.09005 * 109.46403 * 60.00348 * 12 10 9 24 24 H 1.08995 * 109.47035 * 300.00415 * 12 10 9 25 25 H 1.07998 * 120.01328 * 0.02562 * 15 14 13 26 26 H 1.08002 * 119.98838 * 179.74746 * 16 15 14 27 27 H 1.07997 * 119.98751 * 179.97438 * 19 17 16 28 28 H 1.07999 * 120.02057 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8893 2.3964 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2437 -4.8630 -0.0022 13 8 2.1723 -5.9491 -0.0027 14 6 1.6526 -7.2054 -0.0027 15 6 0.2776 -7.3878 -0.0083 16 6 -0.2491 -8.6649 -0.0031 17 6 0.5948 -9.7625 -0.0035 18 9 0.0785 -11.0110 -0.0045 19 6 1.9675 -9.5819 -0.0033 20 6 2.4970 -8.3058 -0.0031 21 1 -0.4850 0.8401 0.0004 22 1 0.3534 -2.3907 -0.0016 23 1 0.6174 -4.9205 -0.8925 24 1 0.6166 -4.9209 0.8875 25 1 -0.3809 -6.5318 -0.0131 26 1 -1.3197 -8.8073 -0.0033 27 1 2.6247 -10.4389 -0.0032 28 1 3.5678 -8.1652 -0.0034 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070266622.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:20 Heat of formation + Delta-G solvation = -115.310946 kcal Electronic energy + Delta-G solvation = -15767.904609 eV Core-core repulsion = 12697.982510 eV Total energy + Delta-G solvation = -3069.922099 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.80493 -41.27953 -39.94755 -38.04502 -36.04008 -33.41389 -32.29196 -30.87103 -29.28074 -26.58378 -24.12682 -23.21204 -21.34283 -20.07469 -19.40561 -18.33514 -17.97154 -17.26558 -17.22503 -16.54833 -16.48796 -15.91038 -15.57834 -15.13900 -15.09952 -14.59309 -14.12360 -13.95417 -13.55802 -13.33175 -13.24458 -12.92759 -12.46552 -12.12205 -11.91493 -11.85880 -11.58536 -10.47703 -10.18364 -10.10580 -9.12618 -8.52695 -6.02465 0.16540 0.19600 1.34687 1.42521 1.55775 1.86224 1.89281 2.34261 2.56698 3.13363 3.21626 3.34059 3.70993 3.82678 3.97057 4.19107 4.22603 4.26558 4.35159 4.60277 4.91678 5.11413 5.13531 5.24798 5.37377 5.69562 5.89959 6.31004 6.52177 7.04578 7.42062 7.97155 8.64388 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.073152 B = 0.004092 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.675202 B = 6841.364004 C = 7208.893692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.008 4.008 3 Si 0.995 3.005 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.080 0.920 9 N -0.558 5.558 10 C 0.434 3.566 11 O -0.625 6.625 12 C 0.062 3.938 13 O -0.313 6.313 14 C 0.103 3.897 15 C -0.184 4.184 16 C -0.108 4.108 17 C 0.041 3.959 18 F -0.147 7.147 19 C -0.106 4.106 20 C -0.135 4.135 21 H 0.281 0.719 22 H 0.402 0.598 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.158 0.842 26 H 0.161 0.839 27 H 0.164 0.836 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.062 -14.850 -0.010 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.196 5.196 10 C 0.221 3.779 11 O -0.512 6.512 12 C -0.016 4.016 13 O -0.226 6.226 14 C 0.057 3.943 15 C -0.203 4.203 16 C -0.126 4.126 17 C 0.022 3.978 18 F -0.125 7.125 19 C -0.125 4.125 20 C -0.153 4.153 21 H 0.090 0.910 22 H 0.236 0.764 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.175 0.825 26 H 0.179 0.821 27 H 0.182 0.818 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.230 -14.674 -0.011 15.026 hybrid contribution -0.331 0.718 0.002 0.790 sum -3.561 -13.957 -0.009 14.404 Atomic orbital electron populations 1.69658 1.06761 1.29607 1.49325 1.26067 0.96610 1.02409 0.95768 0.84838 0.78000 0.76821 0.78483 1.19869 1.19411 1.19400 1.19709 0.92816 0.83598 1.50558 0.90210 1.41725 1.09566 1.04107 1.64186 1.20342 0.88095 0.85766 0.83733 1.90534 1.16046 1.87850 1.56792 1.22388 0.90945 0.83035 1.05230 1.86168 1.35749 1.12261 1.88434 1.19508 0.93173 0.84470 0.97121 1.21399 0.93431 0.99144 1.06327 1.21181 1.01536 0.90402 0.99490 1.17758 0.92442 0.79602 1.08008 1.91472 1.87464 1.39088 1.94511 1.21135 0.93619 0.97820 0.99922 1.20487 1.00845 0.89465 1.04521 0.90977 0.76354 0.87156 0.87149 0.82496 0.82104 0.81813 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.32 13.05 21.66 0.28 -47.03 15 2 C -0.01 -0.40 5.50 84.93 0.47 0.07 15 3 Si 1.00 41.69 29.55 68.60 2.03 43.72 15 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 6 H -0.27 -10.74 7.11 99.48 0.71 -10.04 15 7 C -0.34 -18.77 9.68 84.04 0.81 -17.96 15 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 15 9 N -0.56 -27.78 5.29 -306.97 -1.62 -29.40 15 10 C 0.43 20.67 7.86 87.66 0.69 21.36 15 11 O -0.63 -36.02 16.08 15.97 0.26 -35.76 15 12 C 0.06 2.09 5.22 71.24 0.37 2.46 15 13 O -0.31 -11.27 9.67 -73.96 -0.72 -11.99 15 14 C 0.10 2.90 6.69 22.50 0.15 3.05 15 15 C -0.18 -4.14 9.04 22.36 0.20 -3.94 15 16 C -0.11 -2.13 10.02 22.30 0.22 -1.90 15 17 C 0.04 0.88 7.30 22.37 0.16 1.04 15 18 F -0.15 -3.19 17.27 44.97 0.78 -2.41 15 19 C -0.11 -2.17 10.02 22.30 0.22 -1.95 15 20 C -0.13 -3.31 9.99 22.36 0.22 -3.09 15 21 H 0.28 13.52 8.31 -92.71 -0.77 12.75 15 22 H 0.40 18.36 7.90 -92.71 -0.73 17.62 15 23 H 0.11 3.01 7.65 -2.38 -0.02 2.99 15 24 H 0.11 3.01 7.67 -2.39 -0.02 2.99 15 25 H 0.16 2.89 6.30 -2.91 -0.02 2.87 15 26 H 0.16 2.33 8.06 -2.91 -0.02 2.30 15 27 H 0.16 2.43 8.06 -2.91 -0.02 2.41 15 28 H 0.14 3.37 8.06 -2.91 -0.02 3.35 15 Total: -1.00 -67.78 262.68 5.00 -62.77 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.47 Total: 20.97 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 3.53 Total: -0.86 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -1.34 Total: -76.44 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -0.46 Total: -47.75 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.41 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -67.78 5.00 -62.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070266622.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.538 kcal (2) G-P(sol) polarization free energy of solvation -67.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds