Wall clock time and date at job start Sun Mar 29 2020 22:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99770 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99932 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00107 * 3 2 1 7 7 C 1.38942 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 O 1.42899 * 109.46876 * 179.72354 * 12 10 9 14 14 C 1.35897 * 116.99793 * 179.97438 * 13 12 10 15 15 C 1.38778 * 120.04357 * 359.72176 * 14 13 12 16 16 C 1.38131 * 119.99403 * 179.74934 * 15 14 13 17 17 C 1.38250 * 120.07826 * 0.52819 * 16 15 14 18 18 C 1.38474 * 120.08843 * 359.74686 * 17 16 15 19 19 F 1.35100 * 119.99736 * 180.02562 * 18 17 16 20 20 C 1.38382 * 120.00251 * 359.97438 * 18 17 16 21 21 H 0.97005 * 120.00014 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 24 24 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 25 25 H 1.08003 * 120.00065 * 0.02562 * 15 14 13 26 26 H 1.07998 * 119.96155 * 180.27265 * 16 15 14 27 27 H 1.08002 * 119.95596 * 179.76838 * 17 16 15 28 28 H 1.08003 * 120.03986 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3706 0.0058 13 8 6.0370 -3.7179 0.0097 14 6 7.3842 -3.8959 0.0156 15 6 8.2305 -2.7960 0.0117 16 6 9.5997 -2.9782 0.0228 17 6 10.1287 -4.2554 0.0269 18 6 9.2875 -5.3553 0.0251 19 9 9.8064 -6.6026 0.0296 20 6 7.9152 -5.1769 0.0197 21 1 -0.4850 0.8401 -0.0004 22 1 3.8648 -0.3633 0.0004 23 1 5.9281 -1.8579 -0.8832 24 1 5.9199 -1.8556 0.8967 25 1 7.8185 -1.7977 0.0044 26 1 10.2577 -2.1218 0.0242 27 1 11.1996 -4.3956 0.0318 28 1 7.2585 -6.0343 0.0187 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070266661.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:14 Heat of formation + Delta-G solvation = -87.580158 kcal Electronic energy + Delta-G solvation = -15853.213409 eV Core-core repulsion = 12784.493807 eV Total energy + Delta-G solvation = -3068.719602 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.04255 -40.20132 -38.42873 -36.97292 -34.11001 -31.84870 -31.13959 -29.97871 -28.26947 -24.62482 -23.05304 -22.26177 -19.65270 -18.72497 -18.50796 -16.72365 -16.33522 -16.20117 -16.14593 -15.59257 -15.39285 -15.04389 -14.26974 -13.85771 -13.60138 -13.35313 -12.86739 -12.54271 -12.23432 -12.22958 -11.94263 -11.32626 -11.18118 -10.93946 -10.68955 -10.08206 -9.71334 -9.03105 -8.69518 -8.38903 -8.32329 -6.41772 -3.94967 0.98098 1.16513 2.90489 2.93733 2.99221 3.09113 3.44566 3.52053 4.00229 4.16911 4.49082 4.68395 4.82930 4.87638 5.06080 5.08020 5.22163 5.29527 5.43702 5.64502 5.79335 5.93411 6.08531 6.16986 6.57398 7.27134 7.46543 7.97999 8.44958 8.81277 9.26702 9.62614 10.70583 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.053087 B = 0.004627 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.309606 B = 6049.712487 C = 6561.865448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.309 4.309 8 H 0.122 0.878 9 N -0.580 5.580 10 C 0.448 3.552 11 O -0.555 6.555 12 C 0.047 3.953 13 O -0.277 6.277 14 C 0.168 3.832 15 C -0.225 4.225 16 C -0.050 4.050 17 C -0.201 4.201 18 C 0.138 3.862 19 F -0.137 7.137 20 C -0.191 4.191 21 H 0.276 0.724 22 H 0.372 0.628 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.735 -1.051 0.025 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.220 5.220 10 C 0.233 3.767 11 O -0.436 6.436 12 C -0.032 4.032 13 O -0.188 6.188 14 C 0.120 3.880 15 C -0.244 4.244 16 C -0.068 4.068 17 C -0.220 4.220 18 C 0.118 3.882 19 F -0.115 7.115 20 C -0.211 4.211 21 H 0.086 0.914 22 H 0.205 0.795 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.154 0.846 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 18.944 -1.843 0.025 19.033 hybrid contribution 0.748 1.433 0.018 1.617 sum 19.692 -0.409 0.043 19.696 Atomic orbital electron populations 1.69615 1.05660 1.27764 1.48315 1.25045 0.95531 0.98066 0.97313 0.86663 0.79790 0.83881 0.79020 1.19428 1.19952 1.19432 1.19427 0.78683 0.96898 1.48681 0.86030 1.42022 1.07636 1.05617 1.66700 1.19149 0.86882 0.85139 0.85563 1.90621 1.68957 1.30768 1.53240 1.22592 0.95940 0.82072 1.02546 1.86226 1.17249 1.28356 1.87008 1.18789 0.83308 0.93172 0.92703 1.21412 0.94307 0.98728 1.09916 1.20756 0.94365 0.96480 0.95217 1.20988 1.00177 0.91743 1.09053 1.17265 0.90963 0.79480 1.00466 1.91506 1.87051 1.39238 1.93713 1.20286 0.93577 0.96991 1.10200 0.91367 0.79466 0.89990 0.89988 0.84585 0.84767 0.84821 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.88 13.96 55.50 0.77 -24.11 15 2 C 0.04 1.18 5.50 -17.47 -0.10 1.09 15 3 Si 0.88 18.48 27.74 -169.99 -4.71 13.77 15 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 6 H -0.27 -5.05 6.52 56.52 0.37 -4.68 15 7 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 15 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 15 9 N -0.58 -13.34 5.09 -10.96 -0.06 -13.39 15 10 C 0.45 10.11 7.86 -10.98 -0.09 10.03 15 11 O -0.55 -15.31 16.08 -14.36 -0.23 -15.54 15 12 C 0.05 0.77 5.22 36.01 0.19 0.96 15 13 O -0.28 -4.90 9.67 -39.32 -0.38 -5.28 15 14 C 0.17 2.40 6.69 -39.22 -0.26 2.14 15 15 C -0.22 -2.55 9.04 -39.42 -0.36 -2.91 15 16 C -0.05 -0.47 10.04 -39.62 -0.40 -0.87 15 17 C -0.20 -2.03 10.02 -39.49 -0.40 -2.42 15 18 C 0.14 1.67 7.30 -39.44 -0.29 1.38 15 19 F -0.14 -1.69 17.27 2.25 0.04 -1.65 15 20 C -0.19 -2.60 9.97 -39.37 -0.39 -2.99 15 21 H 0.28 7.21 8.31 -40.82 -0.34 6.87 15 22 H 0.37 7.26 5.76 -40.82 -0.24 7.03 15 23 H 0.08 1.07 7.65 -51.93 -0.40 0.68 15 24 H 0.08 1.08 7.67 -51.93 -0.40 0.69 15 25 H 0.14 1.29 6.30 -52.48 -0.33 0.96 15 26 H 0.13 0.86 8.06 -52.49 -0.42 0.44 15 27 H 0.13 1.04 8.06 -52.49 -0.42 0.62 15 28 H 0.15 1.94 8.06 -52.48 -0.42 1.51 15 LS Contribution 259.56 15.07 3.91 3.91 Total: -1.00 -32.41 259.56 -5.08 -37.49 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -2.19 Total: 7.06 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.24 Total: -2.27 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.72 Total: -37.50 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.61 Total: -20.81 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -4.71 Total: 13.77 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.41 -5.08 -37.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070266661.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.091 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds