Wall clock time and date at job start Sun Mar 29 2020 22:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99770 * 3 2 1 5 5 H 1.48494 * 109.47201 * 29.99932 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00107 * 3 2 1 7 7 C 1.38942 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00163 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 180.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 O 1.42899 * 109.46876 * 179.72354 * 12 10 9 14 14 C 1.35897 * 116.99793 * 179.97438 * 13 12 10 15 15 C 1.38778 * 120.04357 * 359.72176 * 14 13 12 16 16 C 1.38131 * 119.99403 * 179.74934 * 15 14 13 17 17 C 1.38250 * 120.07826 * 0.52819 * 16 15 14 18 18 C 1.38474 * 120.08843 * 359.74686 * 17 16 15 19 19 F 1.35100 * 119.99736 * 180.02562 * 18 17 16 20 20 C 1.38382 * 120.00251 * 359.97438 * 18 17 16 21 21 H 0.97005 * 120.00014 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 24 24 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 25 25 H 1.08003 * 120.00065 * 0.02562 * 15 14 13 26 26 H 1.07998 * 119.96155 * 180.27265 * 16 15 14 27 27 H 1.08002 * 119.95596 * 179.76838 * 17 16 15 28 28 H 1.08003 * 120.03986 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0020 12 6 5.5607 -2.3706 0.0058 13 8 6.0370 -3.7179 0.0097 14 6 7.3842 -3.8959 0.0156 15 6 8.2305 -2.7960 0.0117 16 6 9.5997 -2.9782 0.0228 17 6 10.1287 -4.2554 0.0269 18 6 9.2875 -5.3553 0.0251 19 9 9.8064 -6.6026 0.0296 20 6 7.9152 -5.1769 0.0197 21 1 -0.4850 0.8401 -0.0004 22 1 3.8648 -0.3633 0.0004 23 1 5.9281 -1.8579 -0.8832 24 1 5.9199 -1.8556 0.8967 25 1 7.8185 -1.7977 0.0044 26 1 10.2577 -2.1218 0.0242 27 1 11.1996 -4.3956 0.0318 28 1 7.2585 -6.0343 0.0187 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070266661.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:14 Heat of formation + Delta-G solvation = -110.548964 kcal Electronic energy + Delta-G solvation = -15854.209411 eV Core-core repulsion = 12784.493807 eV Total energy + Delta-G solvation = -3069.715604 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.97033 -41.33819 -40.07242 -38.10644 -36.10018 -33.86855 -32.08301 -30.92246 -29.65469 -26.45929 -23.94309 -23.30123 -21.48263 -20.47575 -19.63112 -18.04363 -17.45728 -17.34431 -17.19399 -16.78215 -16.65567 -16.59544 -15.64819 -15.24245 -14.94121 -14.69386 -14.45162 -14.11883 -13.60810 -13.34558 -12.96287 -12.78397 -12.44996 -12.12882 -12.00765 -11.96436 -11.57805 -10.57890 -10.33778 -9.91590 -9.32817 -8.45166 -6.09329 0.11293 0.28566 1.30759 1.36041 1.46272 1.73210 1.78793 2.22526 2.59393 2.94700 3.09353 3.39653 3.72693 3.91988 3.99651 4.08908 4.16241 4.20745 4.33572 4.42747 5.01632 5.09888 5.23501 5.34332 5.46572 5.71985 5.85921 6.27670 6.52567 6.78739 7.26947 7.81619 8.71849 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.053087 B = 0.004627 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.309606 B = 6049.712487 C = 6561.865448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.968 3.032 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.223 1.223 7 C -0.336 4.336 8 H 0.054 0.946 9 N -0.574 5.574 10 C 0.443 3.557 11 O -0.619 6.619 12 C 0.060 3.940 13 O -0.319 6.319 14 C 0.140 3.860 15 C -0.218 4.218 16 C -0.039 4.039 17 C -0.189 4.189 18 C 0.123 3.877 19 F -0.143 7.143 20 C -0.214 4.214 21 H 0.282 0.718 22 H 0.396 0.604 23 H 0.125 0.875 24 H 0.124 0.876 25 H 0.163 0.837 26 H 0.178 0.822 27 H 0.162 0.838 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.982 2.281 0.078 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.212 4.212 3 Si 0.786 3.214 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.146 1.146 7 C -0.465 4.465 8 H 0.072 0.928 9 N -0.216 5.216 10 C 0.231 3.769 11 O -0.504 6.504 12 C -0.018 4.018 13 O -0.232 6.232 14 C 0.094 3.906 15 C -0.236 4.236 16 C -0.056 4.056 17 C -0.208 4.208 18 C 0.104 3.896 19 F -0.122 7.122 20 C -0.234 4.234 21 H 0.091 0.909 22 H 0.232 0.768 23 H 0.142 0.858 24 H 0.141 0.859 25 H 0.181 0.819 26 H 0.195 0.805 27 H 0.180 0.820 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 23.233 1.484 0.080 23.280 hybrid contribution -0.562 0.247 -0.004 0.614 sum 22.670 1.731 0.076 22.736 Atomic orbital electron populations 1.69803 1.08331 1.29620 1.49108 1.26207 0.96532 1.03006 0.95452 0.85339 0.79744 0.76062 0.80226 1.17817 1.19990 1.14611 1.18982 0.81062 0.95160 1.51314 0.92815 1.41761 1.05900 1.07057 1.66871 1.20456 0.89985 0.83837 0.82643 1.90593 1.71313 1.33138 1.55317 1.22519 0.90263 0.82599 1.06432 1.86148 1.19636 1.29124 1.88248 1.18969 0.82221 0.94305 0.95106 1.21750 0.94807 0.98706 1.08371 1.21258 0.94078 0.97411 0.92901 1.21406 1.01345 0.91268 1.06760 1.17459 0.90675 0.80056 1.01443 1.91486 1.86957 1.39861 1.93873 1.20346 0.94427 0.96909 1.11705 0.90855 0.76770 0.85772 0.85868 0.81928 0.80471 0.82031 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 13.96 21.66 0.30 -54.55 15 2 C -0.01 -0.67 5.50 84.92 0.47 -0.21 15 3 Si 0.97 36.34 27.74 68.60 1.90 38.25 15 4 H -0.25 -8.97 7.11 99.48 0.71 -8.27 15 5 H -0.27 -10.35 7.11 99.48 0.71 -9.65 15 6 H -0.22 -6.71 6.52 99.48 0.65 -6.06 15 7 C -0.34 -19.37 10.16 84.04 0.85 -18.52 15 8 H 0.05 3.74 7.39 -2.91 -0.02 3.72 15 9 N -0.57 -26.07 5.09 -306.98 -1.56 -27.63 15 10 C 0.44 20.10 7.86 87.66 0.69 20.79 15 11 O -0.62 -36.09 16.08 15.97 0.26 -35.83 15 12 C 0.06 1.77 5.22 71.24 0.37 2.14 15 13 O -0.32 -11.10 9.67 -73.35 -0.71 -11.81 15 14 C 0.14 3.79 6.69 22.50 0.15 3.94 15 15 C -0.22 -3.97 9.04 22.37 0.20 -3.77 15 16 C -0.04 -0.53 10.04 22.25 0.22 -0.30 15 17 C -0.19 -3.08 10.02 22.33 0.22 -2.86 15 18 C 0.12 2.83 7.30 22.36 0.16 2.99 15 19 F -0.14 -3.46 17.27 44.97 0.78 -2.69 15 20 C -0.21 -5.87 9.97 22.41 0.22 -5.65 15 21 H 0.28 15.11 8.31 -92.70 -0.77 14.34 15 22 H 0.40 14.02 5.76 -92.71 -0.53 13.49 15 23 H 0.12 2.65 7.65 -2.38 -0.02 2.63 15 24 H 0.12 2.65 7.67 -2.39 -0.02 2.63 15 25 H 0.16 2.03 6.30 -2.91 -0.02 2.02 15 26 H 0.18 0.95 8.06 -2.91 -0.02 0.93 15 27 H 0.16 1.72 8.06 -2.91 -0.02 1.70 15 28 H 0.13 3.74 8.06 -2.91 -0.02 3.71 15 Total: -1.00 -79.64 259.56 5.15 -74.49 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.61 Total: 21.19 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 3.57 Total: -1.42 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -1.26 Total: -82.18 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.45 Total: -47.64 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 1.90 Total: 38.25 kcal Total: -79.64 5.15 -74.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070266661.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.057 kcal (2) G-P(sol) polarization free energy of solvation -79.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds