Wall clock time and date at job start Sun Mar 29 2020 22:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.50697 * 109.47122 * 174.99834 * 4 2 1 6 6 C 1.33380 * 125.20340 * 89.72084 * 5 4 2 7 7 C 1.38435 * 114.92284 * 179.86303 * 6 5 4 8 8 C 1.33389 * 114.91853 * 0.42659 * 7 6 5 9 9 S 1.75884 * 125.20407 * 270.02568 * 5 4 2 10 10 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 11 11 C 1.34777 * 119.99828 * 274.72131 * 10 2 1 12 12 O 1.21693 * 120.00014 * 0.28042 * 11 10 2 13 13 C 1.46373 * 120.00147 * 180.27610 * 11 10 2 14 14 H 1.08002 * 120.00141 * 0.02562 * 13 11 10 15 15 C 1.40050 * 120.00087 * 179.97438 * 13 11 10 16 16 N 1.30664 * 120.00145 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99913 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47257 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46768 * 120.00068 * 17 15 13 20 20 H 1.48498 * 109.47283 * 240.00320 * 17 15 13 21 21 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 22 22 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 24 24 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 25 25 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 26 26 H 1.08003 * 122.54295 * 0.02562 * 6 5 4 27 27 H 1.08002 * 122.53713 * 180.20608 * 7 6 5 28 28 H 1.07993 * 125.19964 * 179.79779 * 8 7 6 29 29 H 0.97001 * 120.00384 * 95.00578 * 10 2 1 30 30 H 0.96996 * 120.00325 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6149 -1.3127 6 6 4.3977 -1.4822 -0.7703 7 6 5.7349 -1.1788 -0.9605 8 6 5.9648 -0.0602 -1.6499 9 16 4.4342 0.6760 -2.1069 10 7 2.0183 -0.6906 1.1962 11 6 2.1523 -0.0169 2.3557 12 8 1.8629 1.1639 2.4104 13 6 2.6459 -0.7054 3.5494 14 1 2.9031 -1.7532 3.5009 15 6 2.7857 -0.0051 4.7542 16 7 2.4750 1.2627 4.8128 17 14 3.4150 -0.8840 6.2777 18 1 3.6933 -2.3054 5.9498 19 1 4.6638 -0.2308 6.7455 20 1 2.3887 -0.8145 7.3487 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.7516 -1.7715 -1.2056 25 1 1.6053 -0.2618 -2.1370 26 1 4.0723 -2.3566 -0.2262 27 1 6.5316 -1.7988 -0.5767 28 1 6.9414 0.3330 -1.8908 29 1 2.2491 -1.6318 1.1526 30 1 2.5714 1.7476 5.6473 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070852495.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:57 Heat of formation + Delta-G solvation = -42.012450 kcal Electronic energy + Delta-G solvation = -14754.422659 eV Core-core repulsion = 12253.892198 eV Total energy + Delta-G solvation = -2500.530462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.84558 -38.56899 -36.41236 -34.54209 -32.47143 -30.79621 -28.15140 -27.21461 -24.15758 -22.82053 -21.21148 -20.12799 -19.11324 -17.97482 -17.44664 -16.58493 -16.29138 -15.90500 -15.04119 -14.52846 -14.40085 -14.14212 -13.92290 -13.43189 -13.31516 -13.29033 -12.83269 -12.69763 -12.60924 -12.41948 -12.33506 -11.97154 -11.84575 -11.60424 -10.92962 -9.78354 -9.50929 -9.38908 -9.27359 -8.25575 -6.80787 0.15824 0.79748 1.14945 1.39506 1.39647 1.57094 1.93419 2.25355 2.52316 3.18411 3.66951 3.86748 4.05760 4.27089 4.36478 4.47096 4.62467 4.74900 4.79684 4.86756 4.91969 5.17811 5.29505 5.34596 5.37845 5.48282 5.67213 5.93761 6.30331 6.39329 6.90830 7.64519 8.56238 8.73880 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.007458 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.282670 B = 3753.462446 C = 4344.633264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.154 3.846 3 H 0.034 0.966 4 C -0.044 4.044 5 C -0.174 4.174 6 C -0.146 4.146 7 C -0.141 4.141 8 C -0.223 4.223 9 S 0.066 5.934 10 N -0.742 5.742 11 C 0.544 3.456 12 O -0.633 6.633 13 C -0.572 4.572 14 H 0.085 0.915 15 C 0.028 3.972 16 N -0.824 5.824 17 Si 0.994 3.006 18 H -0.246 1.246 19 H -0.271 1.271 20 H -0.269 1.269 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.020 0.980 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.146 0.854 27 H 0.157 0.843 28 H 0.183 0.817 29 H 0.392 0.608 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.864 -7.615 -12.231 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.048 3.952 3 H 0.053 0.947 4 C -0.084 4.084 5 C -0.291 4.291 6 C -0.175 4.175 7 C -0.172 4.172 8 C -0.358 4.358 9 S 0.329 5.671 10 N -0.396 5.396 11 C 0.347 3.653 12 O -0.521 6.521 13 C -0.609 4.609 14 H 0.103 0.897 15 C -0.187 4.187 16 N -0.454 5.454 17 Si 0.813 3.187 18 H -0.169 1.169 19 H -0.196 1.196 20 H -0.194 1.194 21 H 0.099 0.901 22 H 0.091 0.909 23 H 0.040 0.960 24 H 0.125 0.875 25 H 0.120 0.880 26 H 0.164 0.836 27 H 0.174 0.826 28 H 0.200 0.800 29 H 0.225 0.775 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.248 -5.304 -12.942 14.358 hybrid contribution 0.752 -1.417 1.629 2.286 sum 4.000 -6.721 -11.312 13.753 Atomic orbital electron populations 1.22094 0.95289 1.02404 1.01117 1.20601 0.93767 0.95635 0.85242 0.94722 1.20472 0.87418 1.03183 0.97314 1.24601 1.00157 0.98681 1.05665 1.20347 0.92802 1.02227 1.02162 1.20452 0.97413 0.98373 1.00931 1.25835 1.01476 1.00585 1.07910 1.84122 0.98886 1.28327 1.55785 1.45767 1.71833 1.12980 1.09021 1.18493 0.77365 0.85911 0.83486 1.90549 1.57061 1.18703 1.85748 1.21450 1.46976 0.98132 0.94352 0.89685 1.26938 0.92949 0.95103 1.03669 1.70202 1.37106 1.10502 1.27540 0.85036 0.78096 0.79469 0.76078 1.16884 1.19602 1.19410 0.90065 0.90944 0.96049 0.87467 0.87968 0.83595 0.82571 0.79966 0.77467 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 9.49 71.98 0.68 -4.42 16 2 C 0.15 5.80 2.56 44.99 0.12 5.92 16 3 H 0.03 1.60 7.57 -2.39 -0.02 1.58 16 4 C -0.04 -1.20 5.25 29.85 0.16 -1.05 16 5 C -0.17 -5.19 5.53 24.59 0.14 -5.06 16 6 C -0.15 -4.23 9.83 21.22 0.21 -4.02 16 7 C -0.14 -3.80 10.18 21.22 0.22 -3.59 16 8 C -0.22 -5.83 11.23 66.72 0.75 -5.08 16 9 S 0.07 1.89 23.33 -56.49 -1.32 0.57 16 10 N -0.74 -32.73 4.64 -446.83 -2.07 -34.80 16 11 C 0.54 31.64 7.71 86.36 0.67 32.30 16 12 O -0.63 -43.00 14.68 -4.33 -0.06 -43.06 16 13 C -0.57 -32.69 9.54 24.83 0.24 -32.46 16 14 H 0.09 4.36 7.85 -2.91 -0.02 4.34 16 15 C 0.03 1.58 5.50 85.31 0.47 2.05 16 16 N -0.82 -51.39 11.83 21.84 0.26 -51.13 16 17 Si 0.99 41.62 29.56 68.60 2.03 43.64 16 18 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 21 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 26 H 0.15 3.85 8.05 -2.91 -0.02 3.82 16 27 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 28 H 0.18 3.69 8.06 -2.91 -0.02 3.67 16 29 H 0.39 14.87 8.52 -92.71 -0.79 14.08 16 30 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16 Total: -1.00 -76.93 279.28 2.82 -74.11 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.35 Total: 26.07 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 3.64 Total: -15.39 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -1.82 Total: -85.94 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.06 Total: -43.06 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.32 Total: 0.57 kcal Total: -76.93 2.82 -74.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070852495.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.094 kcal (2) G-P(sol) polarization free energy of solvation -76.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds