Wall clock time and date at job start Sun Mar 29 2020 22:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00178 * 2 1 4 4 H 1.48501 * 109.46821 * 270.00409 * 3 2 1 5 5 H 1.48501 * 109.46961 * 30.00259 * 3 2 1 6 6 H 1.48492 * 109.47307 * 150.00383 * 3 2 1 7 7 C 1.37878 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99922 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99816 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46863 * 179.97438 * 9 7 2 11 11 S 1.80999 * 109.46976 * 180.02562 * 10 9 7 12 12 C 1.76202 * 99.99940 * 180.02562 * 11 10 9 13 13 N 1.31284 * 126.48709 * 0.02720 * 12 11 10 14 14 N 1.28515 * 109.85936 * 179.97438 * 13 12 11 15 15 C 1.30306 * 110.07825 * 359.97438 * 14 13 12 16 16 N 1.36534 * 126.48289 * 180.29110 * 12 11 10 17 17 C 1.46506 * 127.14503 * 0.02562 * 16 12 11 18 18 C 1.52995 * 117.49881 * 188.92407 * 17 16 12 19 19 C 1.52994 * 117.50315 * 120.26173 * 17 16 12 20 20 H 0.96999 * 119.99844 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46881 * 60.00318 * 9 7 2 22 22 H 1.08994 * 109.47228 * 300.00371 * 9 7 2 23 23 H 1.09003 * 109.47022 * 60.00152 * 10 9 7 24 24 H 1.08994 * 109.47714 * 300.00334 * 10 9 7 25 25 H 1.08002 * 126.33874 * 179.97438 * 15 14 13 26 26 H 1.08999 * 115.54871 * 334.59323 * 17 16 12 27 27 H 1.09002 * 117.50074 * 359.97438 * 18 17 16 28 28 H 1.09003 * 117.50130 * 145.01610 * 18 17 16 29 29 H 1.08995 * 117.50595 * 214.98107 * 19 17 16 30 30 H 1.09004 * 117.49563 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8315 -2.6366 -0.0009 12 6 6.1374 -4.3719 -0.0016 13 7 5.2334 -5.3240 -0.0025 14 7 5.8094 -6.4728 -0.0032 15 6 7.1040 -6.3242 -0.0034 16 7 7.3594 -4.9808 0.0038 17 6 8.6720 -4.3300 0.0118 18 6 9.9015 -5.2171 -0.1938 19 6 9.6026 -4.6309 1.1883 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6805 0.8889 22 1 3.8745 -0.6800 -0.8910 23 1 3.6578 -3.1506 -0.8908 24 1 3.6585 -3.1503 0.8891 25 1 7.8390 -7.1156 -0.0037 26 1 8.7008 -3.3247 -0.4083 27 1 9.7339 -6.2849 -0.3345 28 1 10.7394 -4.7952 -0.7488 29 1 10.2440 -3.8237 1.5420 30 1 9.2381 -5.3127 1.9567 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073328027.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:55 Heat of formation + Delta-G solvation = 100.025917 kcal Electronic energy + Delta-G solvation = -14096.746769 eV Core-core repulsion = 11634.668304 eV Total energy + Delta-G solvation = -2462.078465 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.82121 -37.96606 -33.79422 -32.83226 -31.32836 -30.56187 -25.69117 -24.42878 -23.15091 -22.47214 -21.52422 -20.51519 -18.22200 -17.02157 -16.24980 -16.11315 -15.63654 -14.83180 -14.44519 -13.97425 -13.77005 -13.34729 -12.76712 -12.19420 -12.06342 -11.90120 -11.45064 -11.33175 -11.26739 -10.72964 -10.47485 -10.20849 -10.19186 -9.95874 -9.79039 -9.70184 -9.27751 -8.60876 -7.43269 -6.10196 -4.10814 1.32153 1.61144 2.39228 2.64042 2.89545 3.18741 3.27558 3.35221 3.37465 3.96705 4.23223 4.33008 4.39236 4.43932 4.99683 5.07500 5.22395 5.24846 5.31866 5.46822 5.62826 5.89428 5.97440 6.00129 6.50891 6.69552 7.01925 7.13134 7.62380 8.43610 8.69329 8.93693 9.48950 11.02549 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.043488 B = 0.005224 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.705487 B = 5358.575647 C = 5912.851329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.078 0.922 9 C 0.001 3.999 10 C -0.065 4.065 11 S -0.040 6.040 12 C 0.178 3.822 13 N -0.291 5.291 14 N -0.286 5.286 15 C 0.143 3.857 16 N -0.444 5.444 17 C 0.058 3.942 18 C -0.169 4.169 19 C -0.173 4.173 20 H 0.265 0.735 21 H 0.027 0.973 22 H 0.023 0.977 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.216 0.784 26 H 0.148 0.852 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.247 -7.670 0.421 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.039 4.039 10 C -0.214 4.214 11 S 0.190 5.810 12 C -0.196 4.196 13 N -0.135 5.135 14 N -0.125 5.125 15 C -0.146 4.146 16 N -0.137 5.137 17 C -0.047 4.047 18 C -0.207 4.207 19 C -0.211 4.211 20 H 0.075 0.925 21 H 0.045 0.955 22 H 0.041 0.959 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.232 0.768 26 H 0.166 0.834 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 21.484 -7.349 0.421 22.710 hybrid contribution 0.867 0.317 -0.026 0.924 sum 22.351 -7.031 0.395 23.434 Atomic orbital electron populations 1.69896 1.06244 1.27099 1.50244 1.24957 0.94738 0.99035 0.94295 0.86813 0.80424 0.83638 0.78705 1.20051 1.21120 1.18904 1.20906 0.88012 0.95030 1.51929 0.90391 1.19441 0.97888 0.88999 0.97535 1.23782 0.86179 1.04731 1.06688 1.85489 1.14701 0.88713 1.92097 1.27131 0.83480 1.02649 1.06325 1.74810 1.24483 0.93658 1.20556 1.73969 1.03724 1.17811 1.16955 1.26470 0.96607 0.84807 1.06766 1.46031 1.05879 1.06386 1.55451 1.22029 0.77654 0.98831 1.06208 1.23438 0.97348 0.99981 0.99917 1.23519 1.01364 1.04214 0.91984 0.92474 0.95469 0.95909 0.89026 0.89004 0.76807 0.83429 0.87680 0.86623 0.86711 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.52 -14.64 9.66 -34.44 -0.33 -14.98 16 8 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 9 C 0.00 0.03 4.04 -27.88 -0.11 -0.09 16 10 C -0.07 -1.35 5.17 37.16 0.19 -1.16 16 11 S -0.04 -0.68 21.98 -107.50 -2.36 -3.04 16 12 C 0.18 3.04 8.07 -88.34 -0.71 2.33 16 13 N -0.29 -5.70 11.60 30.68 0.36 -5.34 16 14 N -0.29 -5.01 12.17 29.90 0.36 -4.64 16 15 C 0.14 1.83 12.11 -88.95 -1.08 0.76 16 16 N -0.44 -5.82 3.14 -111.06 -0.35 -6.17 16 17 C 0.06 0.51 6.69 -67.93 -0.45 0.06 16 18 C -0.17 -0.92 10.01 -26.70 -0.27 -1.18 16 19 C -0.17 -1.10 10.42 -26.70 -0.28 -1.38 16 20 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 21 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 22 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 23 H 0.09 1.95 8.14 -51.92 -0.42 1.53 16 24 H 0.09 1.96 8.14 -51.92 -0.42 1.54 16 25 H 0.22 1.64 7.19 -52.49 -0.38 1.27 16 26 H 0.15 1.26 8.08 -51.93 -0.42 0.84 16 27 H 0.10 0.49 6.96 -51.93 -0.36 0.13 16 28 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 276.74 15.07 4.17 4.17 Total: -1.00 -33.25 276.74 -8.48 -41.73 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -3.62 Total: -2.97 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -3.14 Total: -13.67 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 1.14 Total: -42.76 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: -0.68 SS G_CDS: -2.36 Total: -3.04 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.25 -8.48 -41.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073328027.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.757 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds