Wall clock time and date at job start Sun Mar 29 2020 22:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 120.00178 * 2 1 4 4 H 1.48501 * 109.46821 * 270.00409 * 3 2 1 5 5 H 1.48501 * 109.46961 * 30.00259 * 3 2 1 6 6 H 1.48492 * 109.47307 * 150.00383 * 3 2 1 7 7 C 1.37878 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99922 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99816 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46863 * 179.97438 * 9 7 2 11 11 S 1.80999 * 109.46976 * 180.02562 * 10 9 7 12 12 C 1.76202 * 99.99940 * 180.02562 * 11 10 9 13 13 N 1.31284 * 126.48709 * 0.02720 * 12 11 10 14 14 N 1.28515 * 109.85936 * 179.97438 * 13 12 11 15 15 C 1.30306 * 110.07825 * 359.97438 * 14 13 12 16 16 N 1.36534 * 126.48289 * 180.29110 * 12 11 10 17 17 C 1.46506 * 127.14503 * 0.02562 * 16 12 11 18 18 C 1.52995 * 117.49881 * 188.92407 * 17 16 12 19 19 C 1.52994 * 117.50315 * 120.26173 * 17 16 12 20 20 H 0.96999 * 119.99844 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46881 * 60.00318 * 9 7 2 22 22 H 1.08994 * 109.47228 * 300.00371 * 9 7 2 23 23 H 1.09003 * 109.47022 * 60.00152 * 10 9 7 24 24 H 1.08994 * 109.47714 * 300.00334 * 10 9 7 25 25 H 1.08002 * 126.33874 * 179.97438 * 15 14 13 26 26 H 1.08999 * 115.54871 * 334.59323 * 17 16 12 27 27 H 1.09002 * 117.50074 * 359.97438 * 18 17 16 28 28 H 1.09003 * 117.50130 * 145.01610 * 18 17 16 29 29 H 1.08995 * 117.50595 * 214.98107 * 19 17 16 30 30 H 1.09004 * 117.49563 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8315 -2.6366 -0.0009 12 6 6.1374 -4.3719 -0.0016 13 7 5.2334 -5.3240 -0.0025 14 7 5.8094 -6.4728 -0.0032 15 6 7.1040 -6.3242 -0.0034 16 7 7.3594 -4.9808 0.0038 17 6 8.6720 -4.3300 0.0118 18 6 9.9015 -5.2171 -0.1938 19 6 9.6026 -4.6309 1.1883 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6805 0.8889 22 1 3.8745 -0.6800 -0.8910 23 1 3.6578 -3.1506 -0.8908 24 1 3.6585 -3.1503 0.8891 25 1 7.8390 -7.1156 -0.0037 26 1 8.7008 -3.3247 -0.4083 27 1 9.7339 -6.2849 -0.3345 28 1 10.7394 -4.7952 -0.7488 29 1 10.2440 -3.8237 1.5420 30 1 9.2381 -5.3127 1.9567 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073328027.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:55 Heat of formation + Delta-G solvation = 80.118137 kcal Electronic energy + Delta-G solvation = -14097.610035 eV Core-core repulsion = 11634.668304 eV Total energy + Delta-G solvation = -2462.941731 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.96364 -38.62667 -35.81153 -33.83105 -33.34365 -31.80123 -27.66381 -25.41255 -23.91681 -23.41040 -22.90592 -21.90118 -19.21881 -19.08315 -17.37037 -17.20698 -16.52708 -16.42241 -15.76176 -15.63712 -14.98577 -14.79591 -14.32529 -13.74236 -13.13703 -12.96711 -12.64634 -12.51857 -12.34825 -12.24764 -12.02174 -11.85031 -11.68567 -11.47822 -11.25111 -11.19190 -10.79452 -10.67503 -8.76770 -8.31126 -6.38634 0.01906 0.52740 1.03915 1.38326 1.40449 1.51714 1.52160 1.68853 2.35814 2.65050 3.03388 3.36040 3.56899 3.73709 3.82762 4.07259 4.12301 4.19254 4.45603 4.57605 4.66794 4.70771 4.89490 5.01070 5.09017 5.15272 5.24626 5.52405 5.77867 6.20906 6.67796 7.25376 7.50165 8.85559 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.043488 B = 0.005224 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.705487 B = 5358.575647 C = 5912.851329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.241 1.241 7 C -0.535 4.535 8 H 0.032 0.968 9 C 0.008 3.992 10 C -0.069 4.069 11 S 0.014 5.986 12 C 0.153 3.847 13 N -0.339 5.339 14 N -0.336 5.336 15 C 0.171 3.829 16 N -0.433 5.433 17 C 0.014 3.986 18 C -0.140 4.140 19 C -0.163 4.163 20 H 0.269 0.731 21 H 0.037 0.963 22 H 0.036 0.964 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.267 0.733 26 H 0.149 0.851 27 H 0.118 0.882 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.525 -7.148 0.407 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.164 1.164 7 C -0.575 4.575 8 H 0.050 0.950 9 C -0.031 4.031 10 C -0.218 4.218 11 S 0.243 5.757 12 C -0.223 4.223 13 N -0.183 5.183 14 N -0.174 5.174 15 C -0.119 4.119 16 N -0.125 5.125 17 C -0.089 4.089 18 C -0.178 4.178 19 C -0.201 4.201 20 H 0.078 0.922 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.283 0.717 26 H 0.166 0.834 27 H 0.136 0.864 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 25.800 -6.842 0.408 26.695 hybrid contribution -0.358 -0.026 -0.015 0.360 sum 25.441 -6.868 0.394 26.355 Atomic orbital electron populations 1.70060 1.08439 1.28495 1.51749 1.26001 0.95642 1.03588 0.93575 0.85644 0.79675 0.77751 0.79585 1.18702 1.20700 1.16410 1.21207 0.90890 0.93535 1.51820 0.95007 1.19271 0.94719 0.90885 0.98254 1.23381 0.90551 1.02719 1.05164 1.84951 1.09303 0.88889 1.92513 1.27054 0.85075 1.02379 1.07769 1.74700 1.26618 0.94896 1.22038 1.73859 1.06194 1.17554 1.19818 1.27400 0.96108 0.85676 1.02724 1.46264 1.06219 1.06310 1.53756 1.22504 0.76677 0.99969 1.09719 1.23649 0.95186 1.00189 0.98742 1.23620 0.99947 1.04610 0.91961 0.92179 0.94498 0.94611 0.90680 0.90708 0.71707 0.83390 0.86356 0.84316 0.85018 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 2 C 0.01 0.57 5.47 84.65 0.46 1.03 16 3 Si 0.95 43.30 27.47 68.60 1.88 45.19 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 7 C -0.53 -31.37 9.66 25.60 0.25 -31.12 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 9 C 0.01 0.38 4.04 29.85 0.12 0.50 16 10 C -0.07 -2.94 5.17 71.98 0.37 -2.57 16 11 S 0.01 0.47 21.98 -56.49 -1.24 -0.77 16 12 C 0.15 5.16 8.07 179.55 1.45 6.61 16 13 N -0.34 -13.55 11.60 -56.85 -0.66 -14.21 16 14 N -0.34 -11.70 12.17 -59.32 -0.72 -12.42 16 15 C 0.17 3.98 12.11 179.76 2.18 6.16 16 16 N -0.43 -10.46 3.14 -505.27 -1.59 -12.05 16 17 C 0.01 0.21 6.69 44.99 0.30 0.51 16 18 C -0.14 -0.84 10.01 30.62 0.31 -0.54 16 19 C -0.16 -1.44 10.42 30.62 0.32 -1.13 16 20 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 21 H 0.04 1.67 7.20 -2.39 -0.02 1.65 16 22 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 23 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 24 H 0.07 3.38 8.14 -2.40 -0.02 3.36 16 25 H 0.27 2.86 7.19 -2.91 -0.02 2.84 16 26 H 0.15 2.11 8.08 -2.39 -0.02 2.09 16 27 H 0.12 0.44 6.96 -2.39 -0.02 0.42 16 28 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -76.71 276.74 4.81 -71.90 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: 1.08 Total: 2.44 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 5.76 Total: -20.55 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -2.67 Total: -98.21 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.19 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -1.24 Total: -0.77 kcal Total: -76.71 4.81 -71.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073328027.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.017 kcal (2) G-P(sol) polarization free energy of solvation -76.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds