Wall clock time and date at job start Sun Mar 29 2020 22:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99857 * 2 1 4 4 H 1.48495 * 109.46832 * 239.99613 * 3 2 1 5 5 H 1.48494 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46919 * 119.99993 * 3 2 1 7 7 C 1.38756 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00069 * 170.66204 * 7 2 1 9 9 N 1.36819 * 120.00198 * 350.94223 * 7 2 1 10 10 C 1.46913 * 120.52569 * 327.16870 * 9 7 2 11 11 C 1.53433 * 107.79808 * 224.64634 * 10 9 7 12 12 C 1.52858 * 108.82653 * 296.77301 * 11 10 9 13 13 C 1.50612 * 110.46940 * 51.28053 * 12 11 10 14 14 C 1.38477 * 118.91351 * 159.54543 * 13 12 11 15 15 C 1.38365 * 120.34564 * 179.87870 * 14 13 12 16 16 F 1.35102 * 119.92460 * 179.97438 * 15 14 13 17 17 C 1.38551 * 120.15637 * 359.97438 * 15 14 13 18 18 C 1.38138 * 119.87423 * 0.04183 * 17 15 14 19 19 F 1.35096 * 119.99816 * 180.02562 * 18 17 15 20 20 C 1.38812 * 121.51305 * 339.25186 * 13 12 11 21 21 H 0.97006 * 119.99453 * 5.01528 * 1 2 3 22 22 H 1.08997 * 109.79340 * 344.22383 * 10 9 7 23 23 H 1.09001 * 109.79683 * 105.01307 * 10 9 7 24 24 H 1.09001 * 109.57843 * 56.58015 * 11 10 9 25 25 H 1.08997 * 109.57289 * 176.84140 * 11 10 9 26 26 H 1.08999 * 109.30017 * 171.58363 * 12 11 10 27 27 H 1.08990 * 109.30638 * 291.17485 * 12 11 10 28 28 H 1.07997 * 119.83234 * 359.85644 * 14 13 12 29 29 H 1.08004 * 120.06359 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0099 -1.2017 0.0005 8 1 3.0793 -1.2080 -0.1512 9 7 1.3387 -2.3791 0.1876 10 6 0.1509 -2.4319 1.0506 11 6 0.2719 -3.6769 1.9392 12 6 0.2623 -4.9203 1.0502 13 6 1.2804 -4.7878 -0.0517 14 6 1.7310 -5.9322 -0.6881 15 6 2.6641 -5.8447 -1.7060 16 9 3.0983 -6.9667 -2.3206 17 6 3.1544 -4.6090 -2.0964 18 6 2.7105 -3.4624 -1.4666 19 9 3.1865 -2.2562 -1.8457 20 6 1.7683 -3.5488 -0.4436 21 1 -0.4850 0.8369 -0.0734 22 1 0.1062 -1.5377 1.6722 23 1 -0.7479 -2.5007 0.4378 24 1 1.2056 -3.6360 2.5001 25 1 -0.5689 -3.7142 2.6319 26 1 0.4970 -5.7968 1.6541 27 1 -0.7274 -5.0407 0.6098 28 1 1.3525 -6.8982 -0.3881 29 1 3.8824 -4.5423 -2.8913 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073622353.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:52 Heat of formation + Delta-G solvation = -59.168452 kcal Electronic energy + Delta-G solvation = -17189.970863 eV Core-core repulsion = 14134.856075 eV Total energy + Delta-G solvation = -3055.114788 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.92658 -47.63716 -39.00650 -35.78533 -33.52672 -31.65395 -29.59749 -28.20218 -25.81124 -23.42487 -22.57438 -21.40758 -19.19972 -17.85178 -16.58932 -16.22430 -15.68403 -15.05689 -14.79905 -14.52926 -14.20119 -13.97694 -13.50196 -13.17089 -13.09362 -12.69811 -12.65365 -12.00216 -11.50703 -11.36213 -11.25919 -11.09180 -10.65696 -10.47194 -10.20423 -10.07250 -9.84249 -9.19406 -8.63500 -7.94196 -6.62401 -6.42369 -3.89576 1.98130 2.17990 3.13232 3.14963 3.17848 3.98115 4.31121 4.69629 4.89941 5.05225 5.35148 5.42695 5.64989 5.71254 5.78767 5.85359 6.06313 6.27873 6.36675 6.46255 6.63150 6.79667 6.86544 6.89803 7.01587 7.10713 7.24568 7.33604 7.66906 8.01163 8.49973 9.07412 9.45384 10.52441 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.029348 B = 0.009621 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.855089 B = 2909.691084 C = 3721.160223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.033 3.967 3 Si 0.928 3.072 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.303 4.303 8 H 0.103 0.897 9 N -0.428 5.428 10 C 0.143 3.857 11 C -0.145 4.145 12 C -0.057 4.057 13 C -0.163 4.163 14 C -0.098 4.098 15 C -0.015 4.015 16 F -0.160 7.160 17 C -0.136 4.136 18 C 0.028 3.972 19 F -0.131 7.131 20 C 0.177 3.823 21 H 0.273 0.727 22 H 0.089 0.911 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 -5.480 1.917 5.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.172 4.172 3 Si 0.754 3.246 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.112 5.112 10 C 0.020 3.980 11 C -0.183 4.183 12 C -0.094 4.094 13 C -0.170 4.170 14 C -0.119 4.119 15 C -0.038 4.038 16 F -0.140 7.140 17 C -0.157 4.157 18 C 0.003 3.997 19 F -0.109 7.109 20 C 0.057 3.943 21 H 0.083 0.917 22 H 0.108 0.892 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.206 -4.957 2.132 5.400 hybrid contribution 0.508 0.855 -0.396 1.071 sum 0.714 -4.102 1.736 4.511 Atomic orbital electron populations 1.69967 1.06003 1.28431 1.46419 1.25517 0.95641 1.00107 0.95983 0.85950 0.79051 0.80254 0.79362 1.19444 1.20738 1.19648 1.19912 0.93162 0.82141 1.47953 0.87906 1.42816 1.25574 1.04590 1.38245 1.21514 0.87917 0.96440 0.92109 1.22026 1.01766 0.96311 0.98205 1.20128 0.97018 0.97883 0.94398 1.18622 1.05365 0.90254 1.02711 1.20484 0.97300 0.98029 0.96037 1.16553 1.04923 0.81373 1.00938 1.91350 1.89473 1.50458 1.82689 1.20524 1.02526 0.90655 1.02024 1.16562 1.03057 0.80353 0.99701 1.91441 1.87080 1.42072 1.90347 1.17921 0.96499 0.88350 0.91483 0.91728 0.89235 0.92476 0.91896 0.91460 0.91724 0.91782 0.86343 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.66 11.26 55.49 0.62 -22.04 15 2 C 0.03 0.83 5.08 -17.45 -0.09 0.74 15 3 Si 0.93 19.92 29.57 -169.99 -5.03 14.89 15 4 H -0.27 -5.84 7.11 56.52 0.40 -5.43 15 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 15 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 7 C -0.30 -7.88 7.79 -15.13 -0.12 -8.00 15 8 H 0.10 2.70 6.27 -52.48 -0.33 2.37 15 9 N -0.43 -10.49 2.96 -112.48 -0.33 -10.82 15 10 C 0.14 3.14 4.90 -3.59 -0.02 3.12 15 11 C -0.14 -2.54 6.11 -26.58 -0.16 -2.70 15 12 C -0.06 -0.96 5.78 -28.00 -0.16 -1.12 15 13 C -0.16 -3.24 5.76 -104.36 -0.60 -3.84 15 14 C -0.10 -1.83 9.64 -39.45 -0.38 -2.21 15 15 C -0.01 -0.29 7.29 -39.42 -0.29 -0.58 15 16 F -0.16 -3.03 17.26 2.25 0.04 -2.99 15 17 C -0.14 -2.78 10.00 -39.50 -0.40 -3.17 15 18 C 0.03 0.65 7.13 -39.21 -0.28 0.37 15 19 F -0.13 -3.18 13.77 2.25 0.03 -3.15 15 20 C 0.18 4.09 6.34 -83.65 -0.53 3.56 15 21 H 0.27 6.73 8.32 -40.82 -0.34 6.39 15 22 H 0.09 2.08 6.74 -51.93 -0.35 1.73 15 23 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 26 H 0.06 0.93 8.12 -51.93 -0.42 0.51 15 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 28 H 0.12 1.87 8.06 -52.49 -0.42 1.44 15 29 H 0.13 2.27 8.06 -52.48 -0.42 1.85 15 LS Contribution 250.10 15.07 3.77 3.77 Total: -1.00 -26.72 250.10 -6.69 -33.41 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -2.77 Total: 0.74 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -3.02 Total: -13.82 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.29 Total: -32.86 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.07 Total: -6.14 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.72 -6.69 -33.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073622353.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.755 kcal (2) G-P(sol) polarization free energy of solvation -26.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds