Wall clock time and date at job start Sun Mar 29 2020 22:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99857 * 2 1 4 4 H 1.48495 * 109.46832 * 239.99613 * 3 2 1 5 5 H 1.48494 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46919 * 119.99993 * 3 2 1 7 7 C 1.38756 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00069 * 170.66204 * 7 2 1 9 9 N 1.36819 * 120.00198 * 350.94223 * 7 2 1 10 10 C 1.46913 * 120.52569 * 327.16870 * 9 7 2 11 11 C 1.53433 * 107.79808 * 224.64634 * 10 9 7 12 12 C 1.52858 * 108.82653 * 296.77301 * 11 10 9 13 13 C 1.50612 * 110.46940 * 51.28053 * 12 11 10 14 14 C 1.38477 * 118.91351 * 159.54543 * 13 12 11 15 15 C 1.38365 * 120.34564 * 179.87870 * 14 13 12 16 16 F 1.35102 * 119.92460 * 179.97438 * 15 14 13 17 17 C 1.38551 * 120.15637 * 359.97438 * 15 14 13 18 18 C 1.38138 * 119.87423 * 0.04183 * 17 15 14 19 19 F 1.35096 * 119.99816 * 180.02562 * 18 17 15 20 20 C 1.38812 * 121.51305 * 339.25186 * 13 12 11 21 21 H 0.97006 * 119.99453 * 5.01528 * 1 2 3 22 22 H 1.08997 * 109.79340 * 344.22383 * 10 9 7 23 23 H 1.09001 * 109.79683 * 105.01307 * 10 9 7 24 24 H 1.09001 * 109.57843 * 56.58015 * 11 10 9 25 25 H 1.08997 * 109.57289 * 176.84140 * 11 10 9 26 26 H 1.08999 * 109.30017 * 171.58363 * 12 11 10 27 27 H 1.08990 * 109.30638 * 291.17485 * 12 11 10 28 28 H 1.07997 * 119.83234 * 359.85644 * 14 13 12 29 29 H 1.08004 * 120.06359 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0099 -1.2017 0.0005 8 1 3.0793 -1.2080 -0.1512 9 7 1.3387 -2.3791 0.1876 10 6 0.1509 -2.4319 1.0506 11 6 0.2719 -3.6769 1.9392 12 6 0.2623 -4.9203 1.0502 13 6 1.2804 -4.7878 -0.0517 14 6 1.7310 -5.9322 -0.6881 15 6 2.6641 -5.8447 -1.7060 16 9 3.0983 -6.9667 -2.3206 17 6 3.1544 -4.6090 -2.0964 18 6 2.7105 -3.4624 -1.4666 19 9 3.1865 -2.2562 -1.8457 20 6 1.7683 -3.5488 -0.4436 21 1 -0.4850 0.8369 -0.0734 22 1 0.1062 -1.5377 1.6722 23 1 -0.7479 -2.5007 0.4378 24 1 1.2056 -3.6360 2.5001 25 1 -0.5689 -3.7142 2.6319 26 1 0.4970 -5.7968 1.6541 27 1 -0.7274 -5.0407 0.6098 28 1 1.3525 -6.8982 -0.3881 29 1 3.8824 -4.5423 -2.8913 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073622353.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:52 Heat of formation + Delta-G solvation = -72.554574 kcal Electronic energy + Delta-G solvation = -17190.551329 eV Core-core repulsion = 14134.856075 eV Total energy + Delta-G solvation = -3055.695254 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.082 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.50708 -49.44389 -40.63704 -37.46471 -35.13146 -33.40971 -31.20196 -29.86687 -27.53725 -25.10100 -24.16366 -23.07853 -20.76393 -19.63604 -18.22303 -17.90037 -17.42970 -16.71799 -16.46810 -16.18966 -15.88993 -15.62134 -15.17019 -14.84611 -14.63470 -14.27915 -14.23190 -13.61308 -13.26939 -13.00572 -12.88647 -12.72166 -12.33104 -12.15818 -11.71536 -11.62503 -11.45377 -10.97866 -10.39212 -9.53315 -8.45972 -8.20778 -5.81230 0.35288 0.53583 1.38117 1.42584 1.47846 2.23349 2.64972 3.00867 3.06584 3.41623 3.81056 3.87510 4.17337 4.24128 4.27695 4.37306 4.56926 4.79747 5.00480 5.04647 5.09220 5.16379 5.26713 5.29047 5.40680 5.41947 5.49966 5.63709 5.95863 6.26614 6.67995 7.28319 7.63474 8.66876 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.029348 B = 0.009621 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.855089 B = 2909.691084 C = 3721.160223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.010 4.010 3 Si 0.984 3.016 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.321 4.321 8 H 0.088 0.912 9 N -0.458 5.458 10 C 0.149 3.851 11 C -0.134 4.134 12 C -0.057 4.057 13 C -0.155 4.155 14 C -0.091 4.091 15 C -0.002 4.002 16 F -0.151 7.151 17 C -0.137 4.137 18 C -0.008 4.008 19 F -0.148 7.148 20 C 0.154 3.846 21 H 0.271 0.729 22 H 0.065 0.935 23 H 0.036 0.964 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.160 0.840 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.343 -7.824 2.485 8.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.211 4.211 3 Si 0.808 3.192 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.450 4.450 8 H 0.105 0.895 9 N -0.146 5.146 10 C 0.026 3.974 11 C -0.172 4.172 12 C -0.093 4.093 13 C -0.162 4.162 14 C -0.110 4.110 15 C -0.025 4.025 16 F -0.131 7.131 17 C -0.157 4.157 18 C -0.033 4.033 19 F -0.127 7.127 20 C 0.038 3.962 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.178 0.822 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.089 -7.351 2.692 7.829 hybrid contribution 0.609 1.297 -0.671 1.582 sum 0.698 -6.054 2.021 6.420 Atomic orbital electron populations 1.70065 1.06908 1.28742 1.48285 1.26197 0.96393 1.02579 0.95934 0.85107 0.77938 0.77027 0.79128 1.20008 1.20077 1.18889 1.19896 0.92808 0.83510 1.48740 0.89484 1.42903 1.26740 1.04560 1.40426 1.21380 0.86451 0.97773 0.91762 1.21969 1.02850 0.94452 0.97926 1.20269 0.96727 0.98696 0.93657 1.19156 1.04904 0.89250 1.02857 1.20883 0.96091 0.99298 0.94764 1.16740 1.04111 0.81183 1.00461 1.91387 1.89335 1.49808 1.82524 1.20711 1.02663 0.90302 1.02072 1.16988 1.04596 0.80601 1.01093 1.91385 1.87432 1.43263 1.90633 1.18459 0.96592 0.89329 0.91822 0.91928 0.91669 0.94573 0.92501 0.88133 0.87853 0.90216 0.82227 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.72 11.26 21.64 0.24 -48.47 15 2 C -0.01 -0.51 5.08 84.85 0.43 -0.08 15 3 Si 0.98 42.18 29.57 68.60 2.03 44.21 15 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 15 5 H -0.28 -11.39 7.11 99.48 0.71 -10.68 15 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 15 7 C -0.32 -17.37 7.79 84.04 0.65 -16.71 15 8 H 0.09 4.82 6.27 -2.91 -0.02 4.80 15 9 N -0.46 -23.01 2.96 -509.77 -1.51 -24.52 15 10 C 0.15 6.64 4.90 86.45 0.42 7.06 15 11 C -0.13 -4.40 6.11 30.69 0.19 -4.21 15 12 C -0.06 -1.67 5.78 29.77 0.17 -1.50 15 13 C -0.16 -5.75 5.76 -19.70 -0.11 -5.87 15 14 C -0.09 -2.98 9.64 22.36 0.22 -2.76 15 15 C 0.00 -0.07 7.29 22.37 0.16 0.09 15 16 F -0.15 -5.11 17.26 44.97 0.78 -4.33 15 17 C -0.14 -5.39 10.00 22.32 0.22 -5.16 15 18 C -0.01 -0.35 7.13 22.51 0.16 -0.19 15 19 F -0.15 -7.49 13.77 44.97 0.62 -6.87 15 20 C 0.15 7.11 6.34 38.29 0.24 7.35 15 21 H 0.27 13.89 8.32 -92.70 -0.77 13.12 15 22 H 0.06 3.15 6.74 -2.39 -0.02 3.13 15 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 15 25 H 0.10 2.63 8.14 -2.39 -0.02 2.61 15 26 H 0.10 2.34 8.12 -2.39 -0.02 2.32 15 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 28 H 0.16 3.99 8.06 -2.91 -0.02 3.97 15 29 H 0.14 4.97 8.06 -2.91 -0.02 4.95 15 Total: -1.00 -59.39 250.10 6.09 -53.30 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.17 Total: 8.68 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 2.76 Total: -21.99 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.27 Total: -72.99 kcal Atomic # 9 Polarization: -12.60 SS G_CDS: 1.40 Total: -11.21 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -59.39 6.09 -53.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073622353.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.253 kcal (2) G-P(sol) polarization free energy of solvation -59.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds