Wall clock time and date at job start Sun Mar 29 2020 21:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28454 * 124.97437 * 2 1 4 4 C 1.31951 * 110.39471 * 179.97438 * 3 2 1 5 5 C 1.47614 * 126.37069 * 179.97438 * 4 3 2 6 6 O 1.21487 * 120.00030 * 180.02562 * 5 4 3 7 7 O 1.34733 * 120.00224 * 0.02758 * 5 4 3 8 8 C 1.41225 * 107.25609 * 359.97438 * 4 3 2 9 9 C 1.36092 * 124.97759 * 179.97438 * 2 1 3 10 10 N 1.38691 * 126.56239 * 0.02562 * 9 2 1 11 11 C 1.34770 * 120.00301 * 180.02562 * 10 9 2 12 12 O 1.21812 * 119.99778 * 0.02562 * 11 10 9 13 13 C 1.41585 * 120.00723 * 180.02562 * 11 10 9 14 14 H 1.08005 * 119.99160 * 359.97438 * 13 11 10 15 15 C 1.40151 * 120.00558 * 180.02562 * 13 11 10 16 16 N 1.30630 * 119.99906 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00221 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47061 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47300 * 119.99805 * 17 15 13 20 20 H 1.48498 * 109.46934 * 239.99613 * 17 15 13 21 21 H 1.08994 * 109.46884 * 90.02618 * 1 2 3 22 22 H 1.09000 * 109.47068 * 210.02771 * 1 2 3 23 23 H 1.09003 * 109.46919 * 330.02390 * 1 2 3 24 24 H 0.96697 * 117.00213 * 180.02562 * 7 5 4 25 25 H 1.08006 * 127.28390 * 180.02562 * 8 4 3 26 26 H 0.97001 * 120.00061 * 0.02562 * 10 9 2 27 27 H 0.97002 * 119.99797 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2013 1.0526 0.0000 4 6 3.4784 0.7204 0.0006 5 6 4.6247 1.6504 0.0002 6 8 5.7593 1.2160 0.0003 7 8 4.4128 2.9809 -0.0002 8 6 3.5443 -0.6903 0.0015 9 6 2.2452 -1.1151 0.0005 10 7 1.8060 -2.4307 0.0006 11 6 2.6997 -3.4394 0.0016 12 8 3.8932 -3.1958 0.0030 13 6 2.2515 -4.7825 0.0012 14 1 1.1932 -4.9985 0.0004 15 6 3.1808 -5.8315 0.0028 16 7 4.4607 -5.5702 0.0042 17 14 2.5894 -7.6034 0.0015 18 1 1.1046 -7.6296 -0.0007 19 1 3.0989 -8.2944 -1.2101 20 1 3.0945 -8.2947 1.2148 21 1 -0.3633 -0.0005 -1.0276 22 1 -0.3633 -0.8897 0.5143 23 1 -0.3633 0.8902 0.5135 24 1 5.1947 3.5500 -0.0008 25 1 4.4333 -1.3037 0.0026 26 1 0.8556 -2.6247 -0.0001 27 1 5.1040 -6.2963 0.0050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082275185.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:41 Heat of formation + Delta-G solvation = -70.023644 kcal Electronic energy + Delta-G solvation = -16520.910621 eV Core-core repulsion = 13472.872289 eV Total energy + Delta-G solvation = -3048.038333 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.61614 -40.92808 -39.75442 -37.10060 -35.65421 -34.75049 -34.15899 -30.82203 -28.79703 -28.39480 -25.17864 -23.42819 -21.94097 -21.31548 -19.66138 -18.88107 -18.55571 -17.57294 -17.51250 -17.13940 -16.42474 -16.03088 -15.61840 -14.96370 -14.71964 -14.45685 -14.28918 -13.64174 -13.38995 -13.26294 -12.86070 -12.74110 -12.63215 -12.06526 -11.98735 -11.86059 -11.74846 -10.96930 -10.16018 -9.92563 -8.94161 -8.41441 -7.05325 0.22132 1.08054 1.27365 1.44254 1.44304 1.62057 1.94017 2.10413 2.23654 2.42824 2.83791 3.36910 3.60610 4.24559 4.32122 4.37288 4.54660 4.61921 4.89857 5.19112 5.29648 5.42182 5.58362 5.80883 6.02759 6.16274 6.71046 6.77226 7.03273 7.30881 8.31937 8.52616 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.036042 B = 0.006341 C = 0.005408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.682456 B = 4414.605302 C = 5176.144150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.292 5.292 3 N -0.242 5.242 4 C -0.018 4.018 5 C 0.585 3.415 6 O -0.540 6.540 7 O -0.490 6.490 8 C -0.240 4.240 9 C 0.271 3.729 10 N -0.654 5.654 11 C 0.530 3.470 12 O -0.601 6.601 13 C -0.552 4.552 14 H 0.102 0.898 15 C 0.030 3.970 16 N -0.799 5.799 17 Si 1.006 2.994 18 H -0.240 1.240 19 H -0.270 1.270 20 H -0.270 1.270 21 H 0.106 0.894 22 H 0.111 0.889 23 H 0.121 0.879 24 H 0.435 0.565 25 H 0.144 0.856 26 H 0.413 0.587 27 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.837 7.959 0.041 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.088 5.088 3 N -0.080 5.080 4 C -0.175 4.175 5 C 0.428 3.572 6 O -0.428 6.428 7 O -0.303 6.303 8 C -0.273 4.273 9 C 0.052 3.948 10 N -0.304 5.304 11 C 0.339 3.661 12 O -0.486 6.486 13 C -0.587 4.587 14 H 0.120 0.880 15 C -0.189 4.189 16 N -0.427 5.427 17 Si 0.824 3.176 18 H -0.162 1.162 19 H -0.195 1.195 20 H -0.195 1.195 21 H 0.124 0.876 22 H 0.130 0.870 23 H 0.140 0.860 24 H 0.297 0.703 25 H 0.162 0.838 26 H 0.250 0.750 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.702 8.576 0.042 13.715 hybrid contribution 0.862 -1.092 -0.010 1.391 sum -9.840 7.485 0.032 12.363 Atomic orbital electron populations 1.22658 0.69863 1.07444 1.06473 1.45984 1.09000 1.00329 1.53536 1.73495 1.01951 1.12005 1.20504 1.20487 0.90662 0.91921 1.14462 1.19108 0.85719 0.81277 0.71085 1.90900 1.24560 1.79319 1.48045 1.84586 1.44563 1.16221 1.84927 1.21661 0.97252 0.92527 1.15831 1.18668 0.90003 0.83017 1.03113 1.43170 1.11376 0.99807 1.76011 1.17502 0.84875 0.85429 0.78284 1.90627 1.17786 1.83802 1.56419 1.20481 0.96244 0.89087 1.52883 0.87998 1.27085 0.94050 1.06755 0.90978 1.70176 1.03711 1.35890 1.32948 0.84845 0.80338 0.73925 0.78473 1.16204 1.19498 1.19497 0.87599 0.87015 0.86037 0.70318 0.83805 0.74992 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 11.13 127.77 1.42 2.74 15 2 N -0.29 -9.63 3.73 -365.98 -1.36 -10.99 15 3 N -0.24 -8.78 11.97 -48.35 -0.58 -9.36 15 4 C -0.02 -0.75 7.15 42.34 0.30 -0.45 15 5 C 0.59 22.07 8.34 70.30 0.59 22.66 15 6 O -0.54 -23.65 17.70 19.88 0.35 -23.30 15 7 O -0.49 -13.09 13.44 -56.44 -0.76 -13.85 15 8 C -0.24 -11.84 9.58 22.64 0.22 -11.62 15 9 C 0.27 11.53 7.65 131.45 1.01 12.53 15 10 N -0.65 -27.81 5.37 -316.19 -1.70 -29.51 15 11 C 0.53 28.99 7.53 85.07 0.64 29.63 15 12 O -0.60 -38.86 12.05 -4.71 -0.06 -38.92 15 13 C -0.55 -28.41 9.30 23.56 0.22 -28.19 15 14 H 0.10 4.46 7.85 -2.91 -0.02 4.44 15 15 C 0.03 1.55 5.50 85.34 0.47 2.02 15 16 N -0.80 -46.39 11.73 21.85 0.26 -46.13 15 17 Si 1.01 37.36 29.56 68.60 2.03 39.38 15 18 H -0.24 -7.95 7.11 99.48 0.71 -7.25 15 19 H -0.27 -9.81 7.11 99.48 0.71 -9.10 15 20 H -0.27 -9.81 7.11 99.48 0.71 -9.10 15 21 H 0.11 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.11 1.56 7.43 -2.39 -0.02 1.54 15 23 H 0.12 1.64 8.14 -2.39 -0.02 1.62 15 24 H 0.43 6.40 9.11 -74.06 -0.67 5.72 15 25 H 0.14 8.49 5.96 -2.91 -0.02 8.48 15 26 H 0.41 13.38 7.85 -92.71 -0.73 12.65 15 27 H 0.28 14.67 8.29 -92.71 -0.77 13.90 15 Total: -1.00 -81.88 255.83 2.89 -78.98 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.15 Total: 24.36 kcal Atomic # 6 Polarization: 24.47 SS G_CDS: 4.86 Total: 29.34 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -3.39 Total: -95.99 kcal Atomic # 8 Polarization: -75.61 SS G_CDS: -0.46 Total: -76.07 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.38 kcal Total: -81.88 2.89 -78.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082275185.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.959 kcal (2) G-P(sol) polarization free energy of solvation -81.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds