Wall clock time and date at job start Sun Mar 29 2020 22:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30593 * 125.43008 * 2 1 4 4 N 1.40420 * 107.01342 * 180.02562 * 3 2 1 5 5 H 0.97004 * 126.83831 * 180.02562 * 4 3 2 6 6 C 1.35079 * 106.33008 * 0.02562 * 4 3 2 7 7 S 1.76195 * 126.08848 * 180.02562 * 6 4 3 8 8 C 1.80998 * 100.00029 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47044 * 179.97438 * 8 7 6 10 10 C 1.50704 * 115.55969 * 39.70484 * 9 8 7 11 11 H 1.07998 * 119.99701 * 260.72189 * 10 9 8 12 12 C 1.37870 * 120.00478 * 80.71922 * 10 9 8 13 13 N 1.31521 * 119.99942 * 2.28285 * 12 10 9 14 14 Si 1.86803 * 120.00446 * 182.28182 * 12 10 9 15 15 H 1.48504 * 109.46930 * 60.00082 * 14 12 10 16 16 H 1.48498 * 109.47310 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46881 * 300.00401 * 14 12 10 18 18 C 1.53000 * 117.49809 * 185.38532 * 9 8 7 19 19 C 1.53000 * 60.02945 * 107.48402 * 18 9 8 20 20 N 1.31654 * 107.82208 * 0.26234 * 6 4 3 21 21 H 1.08994 * 109.47614 * 89.96849 * 1 2 3 22 22 H 1.09010 * 109.46873 * 209.97343 * 1 2 3 23 23 H 1.09003 * 109.47155 * 329.96383 * 1 2 3 24 24 H 1.09005 * 109.46651 * 60.00390 * 8 7 6 25 25 H 1.08993 * 109.47146 * 300.00253 * 8 7 6 26 26 H 0.97000 * 119.99907 * 174.98513 * 13 12 10 27 27 H 1.09007 * 117.49529 * 214.98534 * 18 9 8 28 28 H 1.09002 * 117.49784 * 359.97438 * 18 9 8 29 29 H 1.09004 * 117.49782 * 107.50216 * 19 18 9 30 30 H 1.08998 * 117.49588 * 252.51667 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0641 0.0000 4 7 3.5963 0.6205 -0.0006 5 1 4.3934 1.1733 -0.0004 6 6 3.5472 -0.7294 -0.0015 7 16 4.9323 -1.8184 -0.0019 8 6 4.0777 -3.4139 -0.0024 9 6 5.1085 -4.5446 -0.0034 10 6 6.3199 -4.3209 0.8647 11 1 7.2440 -3.9773 0.4239 12 6 6.2484 -4.5547 2.2215 13 7 5.1367 -5.0159 2.7517 14 14 7.7307 -4.2167 3.3070 15 1 8.0987 -2.7813 3.2093 16 1 7.3984 -4.5482 4.7158 17 1 8.8734 -5.0523 2.8585 18 6 4.5859 -5.9769 -0.1313 19 6 5.3073 -5.3185 -1.3090 20 7 2.2800 -1.0865 -0.0072 21 1 -0.3634 0.0006 -1.0276 22 1 -0.3633 -0.8903 0.5135 23 1 -0.3633 0.8897 0.5144 24 1 3.4532 -3.4913 -0.8925 25 1 3.4532 -3.4919 0.8875 26 1 5.1085 -5.2492 3.6928 27 1 5.1183 -6.7573 0.4124 28 1 3.5076 -6.1137 -0.2143 29 1 6.3143 -5.6658 -1.5401 30 1 4.7037 -5.0219 -2.1668 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862468.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:45 Heat of formation + Delta-G solvation = 97.617150 kcal Electronic energy + Delta-G solvation = -14510.632217 eV Core-core repulsion = 12048.449300 eV Total energy + Delta-G solvation = -2462.182917 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.53476 -36.65750 -32.97897 -32.06134 -31.36355 -28.11463 -27.73346 -25.45930 -22.73907 -21.16990 -20.22045 -19.39089 -18.19055 -16.31755 -15.68852 -15.42229 -14.69240 -13.96719 -13.69188 -13.37572 -13.15014 -12.87220 -12.43884 -12.20178 -11.92016 -11.45063 -11.04673 -10.96310 -10.57985 -10.29608 -10.07228 -9.85319 -9.76527 -9.67228 -9.57049 -8.97081 -8.55426 -8.13768 -7.04756 -6.13526 -4.22607 1.70113 1.83672 2.96465 3.13797 3.26814 3.28652 3.31946 3.34422 4.32871 4.67808 4.95734 5.16604 5.23071 5.61684 5.75140 5.84792 5.95014 6.13311 6.40104 6.46309 6.48751 6.68375 6.73168 6.81051 7.02623 7.18095 7.24324 7.42967 7.76884 8.24941 8.33032 8.78492 9.44267 10.93720 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.026895 B = 0.007468 C = 0.006725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.833149 B = 3748.332524 C = 4162.650492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.227 3.773 3 N -0.333 5.333 4 N -0.478 5.478 5 H 0.439 0.561 6 C 0.258 3.742 7 S 0.040 5.960 8 C -0.041 4.041 9 C 0.045 3.955 10 C -0.499 4.499 11 H 0.064 0.936 12 C 0.081 3.919 13 N -0.869 5.869 14 Si 0.889 3.111 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.145 4.145 19 C -0.207 4.207 20 N -0.547 5.547 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.264 0.736 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 6.312 -4.643 8.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 N -0.165 5.165 4 N -0.198 5.198 5 H 0.285 0.715 6 C -0.125 4.125 7 S 0.270 5.730 8 C -0.190 4.190 9 C 0.043 3.957 10 C -0.538 4.538 11 H 0.082 0.918 12 C -0.125 4.125 13 N -0.504 5.504 14 Si 0.716 3.284 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.185 4.185 19 C -0.244 4.244 20 N -0.281 5.281 21 H 0.099 0.901 22 H 0.104 0.896 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.343 6.993 -4.459 8.942 hybrid contribution 0.096 0.090 0.752 0.763 sum -3.247 7.083 -3.707 8.629 Atomic orbital electron populations 1.20044 0.84296 1.03786 1.03371 1.24295 0.98161 0.86098 0.97239 1.77714 0.86918 1.22561 1.29322 1.47760 1.07405 1.05006 1.59645 0.71495 1.27670 0.99911 0.87859 0.97078 1.86296 0.98588 0.98448 1.89621 1.23272 0.99796 0.91515 1.04436 1.18556 0.95062 0.87732 0.94333 1.20339 0.95457 1.46764 0.91280 0.91753 1.24958 0.95641 0.94121 0.97774 1.69970 1.25680 1.41403 1.13310 0.86702 0.82936 0.79252 0.79545 1.19725 1.21186 1.20144 1.22577 0.97228 0.98454 1.00218 1.23096 1.00620 1.08631 0.92069 1.71026 0.98889 1.30282 1.27928 0.90134 0.89635 0.90344 0.91542 0.88704 0.92661 0.89616 0.91612 0.90134 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.51 36.01 0.38 -0.30 16 2 C 0.23 3.94 8.13 -156.87 -1.28 2.67 16 3 N -0.33 -5.83 12.78 32.42 0.41 -5.42 16 4 N -0.48 -8.01 7.47 30.45 0.23 -7.78 16 5 H 0.44 5.82 8.96 -182.35 -1.63 4.18 16 6 C 0.26 4.93 8.31 -89.37 -0.74 4.19 16 7 S 0.04 0.79 21.15 -107.50 -2.27 -1.49 16 8 C -0.04 -0.89 5.33 37.16 0.20 -0.70 16 9 C 0.05 1.05 1.64 -155.62 -0.25 0.79 16 10 C -0.50 -12.58 7.52 -34.44 -0.26 -12.84 16 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.08 2.08 5.44 -17.82 -0.10 1.99 16 13 N -0.87 -23.38 12.90 55.43 0.72 -22.67 16 14 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 C -0.15 -3.22 9.49 -26.73 -0.25 -3.47 16 19 C -0.21 -4.25 9.88 -26.70 -0.26 -4.51 16 20 N -0.55 -10.82 10.57 -10.85 -0.11 -10.94 16 21 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.37 7.95 -51.91 -0.41 0.95 16 25 H 0.09 2.30 8.14 -51.92 -0.42 1.88 16 26 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 27 H 0.09 2.02 8.14 -51.93 -0.42 1.59 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 30 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 LS Contribution 280.11 15.07 4.22 4.22 Total: -1.00 -28.63 280.11 -9.37 -38.00 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -4.97 Total: 3.06 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -2.57 Total: -12.19 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 1.24 Total: -46.80 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.27 Total: -1.49 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.63 -9.37 -38.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862468.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.621 kcal (2) G-P(sol) polarization free energy of solvation -28.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds