Wall clock time and date at job start Sun Mar 29 2020 22:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30593 * 125.43008 * 2 1 4 4 N 1.40420 * 107.01342 * 180.02562 * 3 2 1 5 5 H 0.97004 * 126.83831 * 180.02562 * 4 3 2 6 6 C 1.35079 * 106.33008 * 0.02562 * 4 3 2 7 7 S 1.76195 * 126.08848 * 180.02562 * 6 4 3 8 8 C 1.80998 * 100.00029 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47044 * 179.97438 * 8 7 6 10 10 C 1.50704 * 115.55969 * 39.70484 * 9 8 7 11 11 H 1.07998 * 119.99701 * 260.72189 * 10 9 8 12 12 C 1.37870 * 120.00478 * 80.71922 * 10 9 8 13 13 N 1.31521 * 119.99942 * 2.28285 * 12 10 9 14 14 Si 1.86803 * 120.00446 * 182.28182 * 12 10 9 15 15 H 1.48504 * 109.46930 * 60.00082 * 14 12 10 16 16 H 1.48498 * 109.47310 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46881 * 300.00401 * 14 12 10 18 18 C 1.53000 * 117.49809 * 185.38532 * 9 8 7 19 19 C 1.53000 * 60.02945 * 107.48402 * 18 9 8 20 20 N 1.31654 * 107.82208 * 0.26234 * 6 4 3 21 21 H 1.08994 * 109.47614 * 89.96849 * 1 2 3 22 22 H 1.09010 * 109.46873 * 209.97343 * 1 2 3 23 23 H 1.09003 * 109.47155 * 329.96383 * 1 2 3 24 24 H 1.09005 * 109.46651 * 60.00390 * 8 7 6 25 25 H 1.08993 * 109.47146 * 300.00253 * 8 7 6 26 26 H 0.97000 * 119.99907 * 174.98513 * 13 12 10 27 27 H 1.09007 * 117.49529 * 214.98534 * 18 9 8 28 28 H 1.09002 * 117.49784 * 359.97438 * 18 9 8 29 29 H 1.09004 * 117.49782 * 107.50216 * 19 18 9 30 30 H 1.08998 * 117.49588 * 252.51667 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0641 0.0000 4 7 3.5963 0.6205 -0.0006 5 1 4.3934 1.1733 -0.0004 6 6 3.5472 -0.7294 -0.0015 7 16 4.9323 -1.8184 -0.0019 8 6 4.0777 -3.4139 -0.0024 9 6 5.1085 -4.5446 -0.0034 10 6 6.3199 -4.3209 0.8647 11 1 7.2440 -3.9773 0.4239 12 6 6.2484 -4.5547 2.2215 13 7 5.1367 -5.0159 2.7517 14 14 7.7307 -4.2167 3.3070 15 1 8.0987 -2.7813 3.2093 16 1 7.3984 -4.5482 4.7158 17 1 8.8734 -5.0523 2.8585 18 6 4.5859 -5.9769 -0.1313 19 6 5.3073 -5.3185 -1.3090 20 7 2.2800 -1.0865 -0.0072 21 1 -0.3634 0.0006 -1.0276 22 1 -0.3633 -0.8903 0.5135 23 1 -0.3633 0.8897 0.5144 24 1 3.4532 -3.4913 -0.8925 25 1 3.4532 -3.4919 0.8875 26 1 5.1085 -5.2492 3.6928 27 1 5.1183 -6.7573 0.4124 28 1 3.5076 -6.1137 -0.2143 29 1 6.3143 -5.6658 -1.5401 30 1 4.7037 -5.0219 -2.1668 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862468.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:45 Heat of formation + Delta-G solvation = 81.801551 kcal Electronic energy + Delta-G solvation = -14511.318033 eV Core-core repulsion = 12048.449300 eV Total energy + Delta-G solvation = -2462.868733 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.92674 -38.42207 -34.26754 -34.00281 -32.76297 -29.48647 -29.23135 -27.39599 -24.20109 -22.88487 -21.57472 -21.13022 -19.67543 -18.07261 -17.26364 -16.81049 -16.57271 -15.68873 -15.32322 -14.81413 -14.61132 -14.13082 -13.79057 -13.65245 -13.26629 -13.04236 -12.93853 -12.77127 -12.37704 -11.99480 -11.75099 -11.42374 -11.29827 -11.12997 -10.98536 -10.80990 -10.43798 -9.90746 -8.60637 -8.08883 -6.22063 0.17805 0.41777 1.37236 1.45800 1.48113 1.53150 1.75547 1.95822 2.44918 3.21240 3.47276 3.49109 3.65783 4.23276 4.39956 4.68676 4.71874 4.73195 4.76091 4.85350 5.01294 5.04618 5.13156 5.26327 5.46796 5.51300 5.67275 5.78690 5.93855 6.35281 6.83162 6.94974 7.47371 8.97771 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.026895 B = 0.007468 C = 0.006725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.833149 B = 3748.332524 C = 4162.650492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.217 3.783 3 N -0.338 5.338 4 N -0.466 5.466 5 H 0.453 0.547 6 C 0.247 3.753 7 S 0.049 5.951 8 C -0.031 4.031 9 C 0.018 3.982 10 C -0.503 4.503 11 H 0.060 0.940 12 C 0.040 3.960 13 N -0.898 5.898 14 Si 0.938 3.062 15 H -0.268 1.268 16 H -0.289 1.289 17 H -0.271 1.271 18 C -0.151 4.151 19 C -0.181 4.181 20 N -0.573 5.573 21 H 0.101 0.899 22 H 0.089 0.911 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.260 0.740 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 7.338 -5.432 10.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.067 4.067 3 N -0.170 5.170 4 N -0.188 5.188 5 H 0.302 0.698 6 C -0.137 4.137 7 S 0.279 5.721 8 C -0.180 4.180 9 C 0.016 3.984 10 C -0.543 4.543 11 H 0.078 0.922 12 C -0.163 4.163 13 N -0.535 5.535 14 Si 0.763 3.237 15 H -0.193 1.193 16 H -0.215 1.215 17 H -0.196 1.196 18 C -0.191 4.191 19 C -0.218 4.218 20 N -0.307 5.307 21 H 0.119 0.881 22 H 0.108 0.892 23 H 0.117 0.883 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.508 8.029 -5.257 10.218 hybrid contribution 0.106 -0.154 0.949 0.967 sum -3.402 7.875 -4.308 9.599 Atomic orbital electron populations 1.20271 0.81061 1.04983 1.05053 1.25195 1.00082 0.85172 0.96245 1.77701 0.86997 1.22833 1.29458 1.47753 1.08020 1.04423 1.58592 0.69826 1.27396 0.99664 0.88554 0.98112 1.86068 0.98532 0.97372 1.90159 1.23002 0.99264 0.92467 1.03278 1.18667 0.95113 0.88519 0.96125 1.20537 0.95987 1.46092 0.91670 0.92223 1.25546 0.97565 0.94222 0.98933 1.70074 1.27186 1.43001 1.13240 0.85921 0.80583 0.79209 0.77937 1.19291 1.21479 1.19624 1.22491 0.97699 0.97500 1.01385 1.23114 1.00913 1.06034 0.91708 1.71018 0.99444 1.31785 1.28499 0.88098 0.89216 0.88343 0.90551 0.91848 0.93056 0.91622 0.90755 0.89767 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.20 10.51 71.24 0.75 -0.45 16 2 C 0.22 7.16 8.13 138.64 1.13 8.29 16 3 N -0.34 -11.19 12.78 -51.34 -0.66 -11.84 16 4 N -0.47 -14.88 7.47 -57.58 -0.43 -15.31 16 5 H 0.45 11.25 8.96 -213.11 -1.91 9.34 16 6 C 0.25 9.17 8.31 179.91 1.50 10.67 16 7 S 0.05 1.89 21.15 -56.49 -1.19 0.69 16 8 C -0.03 -1.33 5.33 71.98 0.38 -0.94 16 9 C 0.02 0.82 1.64 -52.90 -0.09 0.73 16 10 C -0.50 -25.30 7.52 25.60 0.19 -25.11 16 11 H 0.06 2.99 7.81 -2.91 -0.02 2.97 16 12 C 0.04 2.05 5.44 84.65 0.46 2.51 16 13 N -0.90 -49.06 12.90 21.45 0.28 -48.78 16 14 Si 0.94 41.36 29.54 68.60 2.03 43.39 16 15 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 16 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 18 C -0.15 -6.66 9.49 30.59 0.29 -6.37 16 19 C -0.18 -7.11 9.88 30.62 0.30 -6.81 16 20 N -0.57 -22.04 10.57 -188.25 -1.99 -24.03 16 21 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 23 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.08 3.08 7.95 -2.39 -0.02 3.06 16 25 H 0.06 3.12 8.14 -2.40 -0.02 3.10 16 26 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 27 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 28 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 30 H 0.09 3.20 8.08 -2.39 -0.02 3.18 16 Total: -1.00 -59.90 280.11 2.19 -57.71 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.76 Total: 15.66 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 4.91 Total: -17.48 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -2.80 Total: -99.97 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.19 Total: 0.69 kcal Total: -59.90 2.19 -57.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862468.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.512 kcal (2) G-P(sol) polarization free energy of solvation -59.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds