Wall clock time and date at job start Sun Mar 29 2020 22:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47045 * 274.54479 * 3 2 1 5 5 H 1.48503 * 109.47278 * 34.54331 * 3 2 1 6 6 H 1.48505 * 109.47315 * 154.54031 * 3 2 1 7 7 C 1.38806 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99929 * 164.04449 * 7 2 1 9 9 N 1.36935 * 120.00304 * 344.04676 * 7 2 1 10 10 C 1.47216 * 121.32441 * 155.51324 * 9 7 2 11 11 C 1.52790 * 107.93506 * 115.89335 * 10 9 7 12 12 C 1.50600 * 110.86424 * 47.49515 * 11 10 9 13 13 C 1.39186 * 117.63120 * 160.11546 * 12 11 10 14 14 F 1.35101 * 119.70671 * 358.79204 * 13 12 11 15 15 C 1.38123 * 120.58398 * 178.77479 * 13 12 11 16 16 C 1.38215 * 119.82106 * 359.80109 * 15 13 12 17 17 C 1.38168 * 119.71974 * 0.71600 * 16 15 13 18 18 F 1.35104 * 119.74765 * 179.78807 * 17 16 15 19 19 C 1.37624 * 122.84785 * 339.42553 * 12 11 10 20 20 C 1.46680 * 121.32510 * 335.49233 * 9 7 2 21 21 H 0.97004 * 120.00041 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.77452 * 356.28236 * 10 9 7 23 23 H 1.09006 * 109.81424 * 235.52702 * 10 9 7 24 24 H 1.09005 * 109.19698 * 287.13905 * 11 10 9 25 25 H 1.08998 * 109.16064 * 167.82801 * 11 10 9 26 26 H 1.07990 * 120.08655 * 180.02562 * 15 13 12 27 27 H 1.07997 * 120.13593 * 180.51322 * 16 15 13 28 28 H 1.09003 * 109.43289 * 104.44468 * 20 9 7 29 29 H 1.09000 * 109.43528 * 344.57663 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4016 2.1019 -1.3957 5 1 1.4990 2.6231 0.7939 6 1 3.5925 1.4144 0.6019 7 6 2.0102 -1.2021 0.0005 8 1 3.0590 -1.2203 -0.2566 9 7 1.3651 -2.3650 0.3270 10 6 1.8526 -3.6702 -0.1487 11 6 2.2740 -4.4881 1.0711 12 6 1.2156 -4.4394 2.1413 13 6 1.2325 -5.4370 3.1118 14 9 2.1639 -6.4137 3.0517 15 6 0.3056 -5.4369 4.1358 16 6 -0.6455 -4.4363 4.2020 17 6 -0.6714 -3.4508 3.2340 18 9 -1.6036 -2.4748 3.2957 19 6 0.2580 -3.4526 2.1998 20 6 0.1613 -2.3600 1.1649 21 1 -0.4850 0.8401 -0.0004 22 1 2.7075 -3.5261 -0.8092 23 1 1.0571 -4.1891 -0.6836 24 1 3.2050 -4.0844 1.4691 25 1 2.4321 -5.5237 0.7701 26 1 0.3264 -6.2146 4.8848 27 1 -1.3674 -4.4267 5.0052 28 1 -0.7160 -2.5286 0.5404 29 1 0.0706 -1.3950 1.6637 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084136070.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:49 Heat of formation + Delta-G solvation = -47.176320 kcal Electronic energy + Delta-G solvation = -17031.436320 eV Core-core repulsion = 13976.841550 eV Total energy + Delta-G solvation = -3054.594771 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.082 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.64175 -48.41376 -39.03303 -35.94354 -32.80343 -30.94947 -30.38434 -28.23513 -25.74473 -23.42195 -22.58478 -21.55943 -19.44132 -17.36319 -16.93026 -16.64910 -16.11402 -15.62616 -14.99180 -14.81422 -14.14353 -13.96378 -13.69579 -13.38548 -13.08767 -12.73847 -12.48076 -12.20530 -11.79957 -11.48614 -11.02750 -10.94860 -10.76985 -10.50798 -10.39646 -9.94192 -9.85642 -8.75300 -8.28216 -8.02428 -6.87155 -5.88385 -3.29055 1.31045 1.44740 3.34707 3.42176 3.44459 3.72646 4.41900 4.49760 4.59249 4.89343 5.03690 5.18558 5.38241 5.50061 5.52763 5.86741 5.95071 5.99439 6.21818 6.28788 6.41023 6.45455 6.63623 6.70014 6.75694 7.04044 7.20811 7.44637 7.70995 8.28113 9.08414 9.71169 10.28117 11.22386 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.028865 B = 0.008733 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.800611 B = 3205.460467 C = 3853.417464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.002 3.998 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.254 4.254 8 H 0.072 0.928 9 N -0.592 5.592 10 C 0.142 3.858 11 C -0.099 4.099 12 C -0.071 4.071 13 C 0.075 3.925 14 F -0.142 7.142 15 C -0.145 4.145 16 C -0.138 4.138 17 C 0.086 3.914 18 F -0.133 7.133 19 C -0.085 4.085 20 C 0.206 3.794 21 H 0.257 0.743 22 H 0.066 0.934 23 H 0.030 0.970 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.050 0.950 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 -9.334 6.282 11.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.090 0.910 9 N -0.314 5.314 10 C 0.016 3.984 11 C -0.138 4.138 12 C -0.072 4.072 13 C 0.056 3.944 14 F -0.121 7.121 15 C -0.164 4.164 16 C -0.157 4.157 17 C 0.066 3.934 18 F -0.112 7.112 19 C -0.088 4.088 20 C 0.080 3.920 21 H 0.067 0.933 22 H 0.085 0.915 23 H 0.048 0.952 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.068 0.932 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.081 -9.146 6.245 11.075 hybrid contribution 0.304 0.785 0.200 0.865 sum 0.385 -8.361 6.445 10.564 Atomic orbital electron populations 1.69991 1.05253 1.25903 1.53840 1.25044 0.95410 0.98539 1.00637 0.86220 0.79160 0.83378 0.77679 1.21316 1.21425 1.20339 1.19172 0.92519 0.84160 1.42451 0.91009 1.43986 1.30243 1.01571 1.55572 1.20919 0.97882 0.87038 0.92592 1.20964 0.96148 1.00693 0.95961 1.19472 0.97940 0.93113 0.96715 1.17823 0.90218 0.88650 0.97703 1.91439 1.63883 1.60551 1.96209 1.20656 0.96111 1.00607 0.98989 1.20774 1.00738 0.94672 0.99561 1.17713 0.90152 0.88475 0.97098 1.91501 1.63002 1.60545 1.96102 1.21025 0.92555 0.98378 0.96818 1.19759 0.89675 0.94022 0.88532 0.93308 0.91516 0.95239 0.90388 0.91323 0.84613 0.84453 0.93239 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.95 11.10 55.49 0.62 -25.33 15 2 C 0.00 0.06 4.99 -17.43 -0.09 -0.02 15 3 Si 0.91 21.45 29.58 -169.99 -5.03 16.42 15 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.25 -6.86 9.69 -15.06 -0.15 -7.00 15 8 H 0.07 1.88 7.88 -52.49 -0.41 1.46 15 9 N -0.59 -14.75 2.97 -173.95 -0.52 -15.27 15 10 C 0.14 2.91 6.52 -3.76 -0.02 2.89 15 11 C -0.10 -1.78 5.57 -28.04 -0.16 -1.93 15 12 C -0.07 -1.34 5.77 -104.54 -0.60 -1.94 15 13 C 0.08 1.24 7.21 -39.27 -0.28 0.96 15 14 F -0.14 -2.26 16.40 2.25 0.04 -2.22 15 15 C -0.14 -2.07 10.02 -39.63 -0.40 -2.46 15 16 C -0.14 -2.06 10.02 -39.62 -0.40 -2.45 15 17 C 0.09 1.58 7.22 -39.31 -0.28 1.29 15 18 F -0.13 -2.58 16.60 2.25 0.04 -2.54 15 19 C -0.09 -1.74 5.83 -104.49 -0.61 -2.35 15 20 C 0.21 4.99 4.44 -5.04 -0.02 4.97 15 21 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 22 H 0.07 1.29 7.96 -51.93 -0.41 0.88 15 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 24 H 0.08 1.42 8.14 -51.93 -0.42 0.99 15 25 H 0.07 1.08 7.74 -51.93 -0.40 0.67 15 26 H 0.14 1.51 8.06 -52.49 -0.42 1.09 15 27 H 0.14 1.62 8.06 -52.49 -0.42 1.19 15 28 H 0.05 1.28 8.14 -51.93 -0.42 0.86 15 29 H 0.10 2.83 6.24 -51.93 -0.32 2.51 15 LS Contribution 253.92 15.07 3.83 3.83 Total: -1.00 -28.62 253.92 -6.84 -35.46 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -2.80 Total: -2.28 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -3.01 Total: -8.06 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.10 Total: -40.61 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.07 Total: -4.76 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.62 -6.84 -35.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084136070.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.717 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds