Wall clock time and date at job start Sun Mar 29 2020 22:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47045 * 274.54479 * 3 2 1 5 5 H 1.48503 * 109.47278 * 34.54331 * 3 2 1 6 6 H 1.48505 * 109.47315 * 154.54031 * 3 2 1 7 7 C 1.38806 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99929 * 164.04449 * 7 2 1 9 9 N 1.36935 * 120.00304 * 344.04676 * 7 2 1 10 10 C 1.47216 * 121.32441 * 155.51324 * 9 7 2 11 11 C 1.52790 * 107.93506 * 115.89335 * 10 9 7 12 12 C 1.50600 * 110.86424 * 47.49515 * 11 10 9 13 13 C 1.39186 * 117.63120 * 160.11546 * 12 11 10 14 14 F 1.35101 * 119.70671 * 358.79204 * 13 12 11 15 15 C 1.38123 * 120.58398 * 178.77479 * 13 12 11 16 16 C 1.38215 * 119.82106 * 359.80109 * 15 13 12 17 17 C 1.38168 * 119.71974 * 0.71600 * 16 15 13 18 18 F 1.35104 * 119.74765 * 179.78807 * 17 16 15 19 19 C 1.37624 * 122.84785 * 339.42553 * 12 11 10 20 20 C 1.46680 * 121.32510 * 335.49233 * 9 7 2 21 21 H 0.97004 * 120.00041 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.77452 * 356.28236 * 10 9 7 23 23 H 1.09006 * 109.81424 * 235.52702 * 10 9 7 24 24 H 1.09005 * 109.19698 * 287.13905 * 11 10 9 25 25 H 1.08998 * 109.16064 * 167.82801 * 11 10 9 26 26 H 1.07990 * 120.08655 * 180.02562 * 15 13 12 27 27 H 1.07997 * 120.13593 * 180.51322 * 16 15 13 28 28 H 1.09003 * 109.43289 * 104.44468 * 20 9 7 29 29 H 1.09000 * 109.43528 * 344.57663 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4016 2.1019 -1.3957 5 1 1.4990 2.6231 0.7939 6 1 3.5925 1.4144 0.6019 7 6 2.0102 -1.2021 0.0005 8 1 3.0590 -1.2203 -0.2566 9 7 1.3651 -2.3650 0.3270 10 6 1.8526 -3.6702 -0.1487 11 6 2.2740 -4.4881 1.0711 12 6 1.2156 -4.4394 2.1413 13 6 1.2325 -5.4370 3.1118 14 9 2.1639 -6.4137 3.0517 15 6 0.3056 -5.4369 4.1358 16 6 -0.6455 -4.4363 4.2020 17 6 -0.6714 -3.4508 3.2340 18 9 -1.6036 -2.4748 3.2957 19 6 0.2580 -3.4526 2.1998 20 6 0.1613 -2.3600 1.1649 21 1 -0.4850 0.8401 -0.0004 22 1 2.7075 -3.5261 -0.8092 23 1 1.0571 -4.1891 -0.6836 24 1 3.2050 -4.0844 1.4691 25 1 2.4321 -5.5237 0.7701 26 1 0.3264 -6.2146 4.8848 27 1 -1.3674 -4.4267 5.0052 28 1 -0.7160 -2.5286 0.5404 29 1 0.0706 -1.3950 1.6637 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084136070.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:49 Heat of formation + Delta-G solvation = -62.882564 kcal Electronic energy + Delta-G solvation = -17032.117394 eV Core-core repulsion = 13976.841550 eV Total energy + Delta-G solvation = -3055.275844 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.082 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.90039 -49.87860 -40.48948 -37.59755 -34.57994 -32.53755 -32.08353 -29.71204 -27.59300 -25.04823 -24.23497 -22.97871 -21.06980 -19.04686 -18.32656 -18.03555 -17.75671 -16.99768 -16.74247 -16.33941 -15.69621 -15.49027 -15.34110 -15.06249 -14.52847 -14.26030 -14.04833 -13.66966 -13.34950 -13.18036 -12.75757 -12.56703 -12.55446 -12.29000 -12.11329 -11.84247 -11.45685 -10.72731 -9.74189 -9.42571 -8.86460 -7.95251 -5.38969 -0.03478 0.11613 1.45285 1.47343 1.57324 2.38307 2.46894 3.16333 3.21656 3.26143 3.52962 3.62452 3.75176 4.06160 4.16437 4.40960 4.49449 4.60687 4.85020 4.88233 4.95921 5.03429 5.08176 5.12204 5.19576 5.29763 5.51457 5.62106 5.87182 6.26205 7.03458 7.72293 8.27202 9.14250 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.028865 B = 0.008733 C = 0.007265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.800611 B = 3205.460467 C = 3853.417464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.052 4.052 3 Si 0.972 3.028 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.264 4.264 8 H 0.078 0.922 9 N -0.612 5.612 10 C 0.138 3.862 11 C -0.090 4.090 12 C -0.085 4.085 13 C 0.077 3.923 14 F -0.135 7.135 15 C -0.120 4.120 16 C -0.118 4.118 17 C 0.066 3.934 18 F -0.147 7.147 19 C -0.116 4.116 20 C 0.223 3.777 21 H 0.252 0.748 22 H 0.074 0.926 23 H 0.029 0.971 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.182 0.818 27 H 0.178 0.822 28 H 0.014 0.986 29 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 -11.294 8.124 13.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.394 4.394 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.013 3.987 11 C -0.128 4.128 12 C -0.087 4.087 13 C 0.058 3.942 14 F -0.114 7.114 15 C -0.138 4.138 16 C -0.137 4.137 17 C 0.047 3.953 18 F -0.126 7.126 19 C -0.119 4.119 20 C 0.097 3.903 21 H 0.061 0.939 22 H 0.093 0.907 23 H 0.047 0.953 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.200 0.800 27 H 0.195 0.805 28 H 0.031 0.969 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.033 -11.143 8.087 13.807 hybrid contribution 0.017 1.266 -0.342 1.311 sum 1.050 -9.877 7.744 12.595 Atomic orbital electron populations 1.70170 1.06763 1.26137 1.55447 1.25847 0.96147 1.01732 1.01018 0.85198 0.78122 0.79198 0.77575 1.20862 1.21960 1.19237 1.19547 0.92955 0.85292 1.41566 0.90471 1.44251 1.30290 1.02634 1.56284 1.21092 0.97966 0.85557 0.94123 1.20848 0.95820 1.01609 0.94569 1.19535 0.97661 0.93595 0.97877 1.17821 0.90782 0.88020 0.97599 1.91464 1.63721 1.60007 1.96165 1.21162 0.93767 1.00541 0.98319 1.21172 1.00987 0.92738 0.98755 1.18035 0.89893 0.89473 0.97948 1.91464 1.63459 1.61433 1.96216 1.20633 0.95280 0.98501 0.97443 1.19204 0.88474 0.93874 0.88783 0.93902 0.90746 0.95259 0.90517 0.88459 0.80022 0.80504 0.96850 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.51 11.10 21.65 0.24 -56.27 15 2 C -0.05 -2.95 4.99 84.86 0.42 -2.53 15 3 Si 0.97 45.16 29.58 68.60 2.03 47.19 15 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 15 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 7 C -0.26 -14.64 9.69 84.03 0.81 -13.82 15 8 H 0.08 4.08 7.88 -2.91 -0.02 4.06 15 9 N -0.61 -31.56 2.97 -704.26 -2.09 -33.66 15 10 C 0.14 5.69 6.52 86.17 0.56 6.25 15 11 C -0.09 -3.12 5.57 29.75 0.17 -2.96 15 12 C -0.09 -3.09 5.77 -19.81 -0.11 -3.21 15 13 C 0.08 2.26 7.21 22.47 0.16 2.43 15 14 F -0.13 -3.71 16.40 44.97 0.74 -2.98 15 15 C -0.12 -2.79 10.02 22.24 0.22 -2.57 15 16 C -0.12 -3.04 10.02 22.25 0.22 -2.82 15 17 C 0.07 2.40 7.22 22.45 0.16 2.56 15 18 F -0.15 -5.84 16.60 44.97 0.75 -5.09 15 19 C -0.12 -4.82 5.83 -19.78 -0.12 -4.93 15 20 C 0.22 11.43 4.44 85.63 0.38 11.81 15 21 H 0.25 14.67 8.31 -92.71 -0.77 13.90 15 22 H 0.07 2.88 7.96 -2.39 -0.02 2.86 15 23 H 0.03 1.20 8.14 -2.38 -0.02 1.18 15 24 H 0.08 2.68 8.14 -2.38 -0.02 2.66 15 25 H 0.10 2.79 7.74 -2.39 -0.02 2.78 15 26 H 0.18 2.70 8.06 -2.92 -0.02 2.67 15 27 H 0.18 3.20 8.06 -2.91 -0.02 3.18 15 28 H 0.01 0.77 8.14 -2.39 -0.02 0.75 15 29 H 0.07 3.79 6.24 -2.39 -0.01 3.78 15 Total: -1.00 -64.79 253.92 5.71 -59.07 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 1.17 Total: 1.53 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 2.89 Total: -9.79 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -1.85 Total: -89.93 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 1.48 Total: -8.07 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -64.79 5.71 -59.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084136070.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.811 kcal (2) G-P(sol) polarization free energy of solvation -64.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds