Wall clock time and date at job start Sun Mar 29 2020 22:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.53000 * 109.47378 * 89.99779 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.33391 * 125.19937 * 90.00083 * 5 4 3 7 7 C 1.38423 * 114.92045 * 179.97438 * 6 5 4 8 8 C 1.33390 * 114.91979 * 359.97438 * 7 6 5 9 9 S 1.75878 * 125.20693 * 269.69344 * 5 4 3 10 10 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 11 11 O 1.21682 * 119.99988 * 180.02562 * 10 2 1 12 12 C 1.46376 * 119.99811 * 0.02562 * 10 2 1 13 13 H 1.07999 * 120.00151 * 359.97438 * 12 10 2 14 14 C 1.40050 * 119.99871 * 179.97438 * 12 10 2 15 15 N 1.30676 * 119.99970 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00162 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46819 * 59.99656 * 16 14 12 18 18 H 1.48494 * 109.47285 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47196 * 300.00153 * 16 14 12 20 20 H 1.08997 * 109.46809 * 89.99883 * 1 2 3 21 21 H 1.08997 * 109.47355 * 210.00390 * 1 2 3 22 22 H 1.09005 * 109.47024 * 330.01005 * 1 2 3 23 23 H 1.09000 * 109.47518 * 329.99267 * 3 2 1 24 24 H 1.09008 * 109.47096 * 209.99944 * 3 2 1 25 25 H 1.09000 * 109.46884 * 60.00202 * 4 3 2 26 26 H 1.09000 * 109.46955 * 299.99518 * 4 3 2 27 27 H 1.07995 * 122.54106 * 359.95411 * 6 5 4 28 28 H 1.08001 * 122.53959 * 180.02562 * 7 6 5 29 29 H 1.07998 * 125.20163 * 180.02562 * 8 7 6 30 30 H 0.96996 * 119.99793 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 6 3.2065 3.0153 1.4424 6 6 2.6475 4.2264 1.4422 7 6 3.5428 5.2821 1.4427 8 6 4.8289 4.9283 1.4439 9 16 4.9581 3.1742 1.4503 10 6 2.1389 -1.1672 0.0005 11 8 3.3557 -1.1672 0.0010 12 6 1.4069 -2.4348 0.0005 13 1 0.3269 -2.4348 0.0005 14 6 2.1071 -3.6477 0.0005 15 7 3.4139 -3.6478 0.0000 16 14 1.1731 -5.2654 0.0012 17 1 0.3188 -5.3443 -1.2109 18 1 2.1380 -6.3942 0.0005 19 1 0.3199 -5.3438 1.2140 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5137 23 1 1.6085 2.0284 -0.5139 24 1 3.1500 1.1384 -0.5139 25 1 3.0416 0.9509 1.9563 26 1 1.5000 1.8409 1.9562 27 1 1.5774 4.3723 1.4413 28 1 3.2242 6.3141 1.4430 29 1 5.6633 5.6140 1.4449 30 1 3.8988 -4.4878 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086442069.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:13 Heat of formation + Delta-G solvation = -6.822560 kcal Electronic energy + Delta-G solvation = -14464.230667 eV Core-core repulsion = 11965.226154 eV Total energy + Delta-G solvation = -2499.004514 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.12183 -37.37271 -34.29270 -32.44044 -31.99768 -28.07044 -26.12994 -25.39813 -23.63554 -21.93920 -19.07512 -19.01317 -16.87062 -16.46889 -15.62241 -15.28370 -14.52696 -14.25219 -13.88547 -13.36023 -12.88788 -12.61228 -12.39889 -11.89828 -11.78945 -11.54215 -11.43546 -11.38162 -11.12764 -10.91112 -10.59484 -10.34869 -10.20508 -10.07610 -8.85581 -8.50165 -8.29058 -7.59404 -7.21495 -6.19381 -4.65130 1.19341 1.85119 2.24904 2.89884 3.15163 3.20290 3.21900 4.08489 4.53491 4.57352 5.14512 5.21420 5.50375 5.66657 5.68946 5.70928 5.89548 6.01740 6.06267 6.17301 6.38934 6.43576 6.47982 6.54058 6.68272 6.77949 7.44183 7.61761 8.12952 8.34209 9.01776 9.41575 10.57343 10.76016 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.048245 B = 0.005432 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.235041 B = 5153.334345 C = 5610.454225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.650 5.650 3 C 0.136 3.864 4 C -0.068 4.068 5 C -0.148 4.148 6 C -0.158 4.158 7 C -0.132 4.132 8 C -0.234 4.234 9 S 0.109 5.891 10 C 0.555 3.445 11 O -0.575 6.575 12 C -0.544 4.544 13 H 0.072 0.928 14 C 0.087 3.913 15 N -0.767 5.767 16 Si 0.907 3.093 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.268 1.268 20 H 0.031 0.969 21 H 0.072 0.928 22 H 0.040 0.960 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.158 0.842 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 12.715 2.690 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.388 5.388 3 C 0.011 3.989 4 C -0.109 4.109 5 C -0.266 4.266 6 C -0.188 4.188 7 C -0.163 4.163 8 C -0.370 4.370 9 S 0.373 5.627 10 C 0.361 3.639 11 O -0.458 6.458 12 C -0.581 4.581 13 H 0.090 0.910 14 C -0.133 4.133 15 N -0.396 5.396 16 Si 0.731 3.269 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.193 1.193 20 H 0.050 0.950 21 H 0.090 0.910 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.176 0.824 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.473 11.583 2.687 11.900 hybrid contribution -1.721 0.355 0.013 1.758 sum -2.194 11.938 2.700 12.435 Atomic orbital electron populations 1.21396 0.82185 1.01036 0.99635 1.48029 1.05189 1.05322 1.80225 1.20942 0.98029 0.86480 0.93457 1.20698 0.98799 0.90924 1.00447 1.24674 0.96155 0.99269 1.06536 1.20075 1.00948 0.91077 1.06689 1.20096 0.92233 1.00106 1.03873 1.25602 1.00718 0.98582 1.12078 1.84644 1.04829 1.01089 1.72141 1.18276 0.87026 0.82276 0.76372 1.90597 1.13970 1.86264 1.54948 1.20982 0.93685 0.89271 1.54140 0.91003 1.25739 0.94609 1.00298 0.92608 1.70012 1.07067 1.27394 1.35088 0.86453 0.79859 0.81114 0.79456 1.19259 1.20552 1.19263 0.95032 0.90973 0.94109 0.92709 0.90793 0.90102 0.90581 0.84604 0.84859 0.82407 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.87 10.15 59.85 0.61 2.48 16 2 N -0.65 -14.82 2.87 -183.24 -0.53 -15.34 16 3 C 0.14 2.70 5.39 -4.04 -0.02 2.68 16 4 C -0.07 -1.21 6.03 -27.88 -0.17 -1.37 16 5 C -0.15 -2.33 5.76 -36.00 -0.21 -2.54 16 6 C -0.16 -2.14 10.05 -41.21 -0.41 -2.55 16 7 C -0.13 -1.61 10.18 -41.21 -0.42 -2.03 16 8 C -0.23 -2.91 11.23 29.04 0.33 -2.58 16 9 S 0.11 1.66 23.33 -107.50 -2.51 -0.85 16 10 C 0.55 15.79 7.61 -12.99 -0.10 15.69 16 11 O -0.58 -18.53 14.60 5.21 0.08 -18.45 16 12 C -0.54 -15.25 8.74 -35.63 -0.31 -15.56 16 13 H 0.07 1.83 6.00 -52.49 -0.31 1.51 16 14 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 15 N -0.77 -22.95 11.83 55.55 0.66 -22.29 16 16 Si 0.91 20.01 29.56 -169.99 -5.02 14.99 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.07 1.36 6.09 -51.93 -0.32 1.05 16 22 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 23 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 24 H 0.07 1.66 7.42 -51.92 -0.39 1.28 16 25 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 30 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 LS Contribution 276.69 15.07 4.17 4.17 Total: -1.00 -33.27 276.69 -7.49 -40.76 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -3.53 Total: 0.48 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -0.80 Total: -3.45 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.13 Total: -37.64 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.08 Total: -18.45 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.51 Total: -0.85 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.27 -7.49 -40.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086442069.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.934 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds