Wall clock time and date at job start Sun Mar 29 2020 22:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.53000 * 109.47378 * 89.99779 * 3 2 1 5 5 C 1.50706 * 109.47116 * 179.97438 * 4 3 2 6 6 C 1.33391 * 125.19937 * 90.00083 * 5 4 3 7 7 C 1.38423 * 114.92045 * 179.97438 * 6 5 4 8 8 C 1.33390 * 114.91979 * 359.97438 * 7 6 5 9 9 S 1.75878 * 125.20693 * 269.69344 * 5 4 3 10 10 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 11 11 O 1.21682 * 119.99988 * 180.02562 * 10 2 1 12 12 C 1.46376 * 119.99811 * 0.02562 * 10 2 1 13 13 H 1.07999 * 120.00151 * 359.97438 * 12 10 2 14 14 C 1.40050 * 119.99871 * 179.97438 * 12 10 2 15 15 N 1.30676 * 119.99970 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00162 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46819 * 59.99656 * 16 14 12 18 18 H 1.48494 * 109.47285 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47196 * 300.00153 * 16 14 12 20 20 H 1.08997 * 109.46809 * 89.99883 * 1 2 3 21 21 H 1.08997 * 109.47355 * 210.00390 * 1 2 3 22 22 H 1.09005 * 109.47024 * 330.01005 * 1 2 3 23 23 H 1.09000 * 109.47518 * 329.99267 * 3 2 1 24 24 H 1.09008 * 109.47096 * 209.99944 * 3 2 1 25 25 H 1.09000 * 109.46884 * 60.00202 * 4 3 2 26 26 H 1.09000 * 109.46955 * 299.99518 * 4 3 2 27 27 H 1.07995 * 122.54106 * 359.95411 * 6 5 4 28 28 H 1.08001 * 122.53959 * 180.02562 * 7 6 5 29 29 H 1.07998 * 125.20163 * 180.02562 * 8 7 6 30 30 H 0.96996 * 119.99793 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 6 3.2065 3.0153 1.4424 6 6 2.6475 4.2264 1.4422 7 6 3.5428 5.2821 1.4427 8 6 4.8289 4.9283 1.4439 9 16 4.9581 3.1742 1.4503 10 6 2.1389 -1.1672 0.0005 11 8 3.3557 -1.1672 0.0010 12 6 1.4069 -2.4348 0.0005 13 1 0.3269 -2.4348 0.0005 14 6 2.1071 -3.6477 0.0005 15 7 3.4139 -3.6478 0.0000 16 14 1.1731 -5.2654 0.0012 17 1 0.3188 -5.3443 -1.2109 18 1 2.1380 -6.3942 0.0005 19 1 0.3199 -5.3438 1.2140 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5137 23 1 1.6085 2.0284 -0.5139 24 1 3.1500 1.1384 -0.5139 25 1 3.0416 0.9509 1.9563 26 1 1.5000 1.8409 1.9562 27 1 1.5774 4.3723 1.4413 28 1 3.2242 6.3141 1.4430 29 1 5.6633 5.6140 1.4449 30 1 3.8988 -4.4878 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086442069.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:13 Heat of formation + Delta-G solvation = -28.480161 kcal Electronic energy + Delta-G solvation = -14465.169811 eV Core-core repulsion = 11965.226154 eV Total energy + Delta-G solvation = -2499.943658 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.84238 -38.70838 -36.15978 -34.59091 -33.45293 -29.52233 -28.04269 -26.91613 -25.07609 -23.33183 -20.99371 -20.07880 -18.42397 -18.06644 -17.66357 -16.50625 -16.17173 -16.02288 -15.51396 -14.86103 -14.35927 -13.97452 -13.67681 -13.40478 -13.25356 -13.09399 -13.03682 -12.92441 -12.85800 -12.67702 -12.20596 -12.05870 -11.83129 -11.52219 -10.91169 -9.81803 -9.64056 -9.45018 -9.03159 -8.27872 -6.83916 0.11278 0.73498 1.18998 1.40018 1.43563 1.55118 1.88442 2.24549 2.47039 2.87088 3.61810 3.97250 4.01508 4.27373 4.34783 4.54254 4.57399 4.61722 4.75304 4.88798 4.91741 5.05385 5.14233 5.26984 5.37719 5.40644 5.66276 5.76922 6.15095 6.40328 6.88195 7.41999 8.48063 8.68285 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.048245 B = 0.005432 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.235041 B = 5153.334345 C = 5610.454225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.653 5.653 3 C 0.138 3.862 4 C -0.051 4.051 5 C -0.179 4.179 6 C -0.136 4.136 7 C -0.134 4.134 8 C -0.213 4.213 9 S 0.038 5.962 10 C 0.535 3.465 11 O -0.630 6.630 12 C -0.570 4.570 13 H 0.095 0.905 14 C 0.027 3.973 15 N -0.823 5.823 16 Si 0.996 3.004 17 H -0.253 1.253 18 H -0.277 1.277 19 H -0.253 1.253 20 H 0.044 0.956 21 H 0.064 0.936 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.097 0.903 27 H 0.163 0.837 28 H 0.172 0.828 29 H 0.188 0.812 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 14.345 2.845 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.389 5.389 3 C 0.014 3.986 4 C -0.091 4.091 5 C -0.297 4.297 6 C -0.166 4.166 7 C -0.164 4.164 8 C -0.348 4.348 9 S 0.301 5.699 10 C 0.341 3.659 11 O -0.517 6.517 12 C -0.606 4.606 13 H 0.113 0.887 14 C -0.187 4.187 15 N -0.453 5.453 16 Si 0.815 3.185 17 H -0.177 1.177 18 H -0.201 1.201 19 H -0.176 1.176 20 H 0.063 0.937 21 H 0.083 0.917 22 H 0.100 0.900 23 H 0.110 0.890 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.116 0.884 27 H 0.180 0.820 28 H 0.190 0.810 29 H 0.205 0.795 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.155 13.266 2.843 13.929 hybrid contribution -0.913 0.036 -0.042 0.915 sum -4.068 13.302 2.802 14.189 Atomic orbital electron populations 1.21611 0.79128 1.02749 1.00995 1.47915 1.07219 1.04868 1.78927 1.21041 0.96528 0.86009 0.95040 1.20365 0.99304 0.91002 0.98453 1.24425 0.95642 0.99151 1.10480 1.20463 1.02530 0.90218 1.03374 1.20497 0.91587 1.01508 1.02849 1.25943 1.02168 0.96183 1.10473 1.84930 1.06228 1.05118 1.73668 1.18711 0.86693 0.84357 0.76119 1.90549 1.16305 1.87586 1.57280 1.21536 0.94971 0.89806 1.54305 0.88722 1.27026 0.95474 1.05041 0.91207 1.70205 1.09632 1.28895 1.36579 0.85098 0.78230 0.74756 0.80397 1.17703 1.20140 1.17640 0.93712 0.91718 0.89959 0.89021 0.94760 0.94618 0.88439 0.81984 0.81049 0.79476 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.39 10.15 127.77 1.30 4.69 16 2 N -0.65 -30.04 2.87 -851.88 -2.45 -32.49 16 3 C 0.14 5.55 5.39 86.38 0.47 6.01 16 4 C -0.05 -1.83 6.03 29.85 0.18 -1.65 16 5 C -0.18 -5.57 5.76 24.59 0.14 -5.43 16 6 C -0.14 -3.24 10.05 21.22 0.21 -3.03 16 7 C -0.13 -2.74 10.18 21.22 0.22 -2.53 16 8 C -0.21 -4.76 11.23 66.72 0.75 -4.01 16 9 S 0.04 1.18 23.33 -56.49 -1.32 -0.14 16 10 C 0.54 31.68 7.61 86.36 0.66 32.34 16 11 O -0.63 -43.24 14.60 -4.29 -0.06 -43.30 16 12 C -0.57 -32.44 8.74 24.83 0.22 -32.22 16 13 H 0.09 4.76 6.00 -2.91 -0.02 4.74 16 14 C 0.03 1.54 5.50 85.30 0.47 2.01 16 15 N -0.82 -51.34 11.83 21.84 0.26 -51.08 16 16 Si 1.00 41.11 29.56 68.60 2.03 43.14 16 17 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 18 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 19 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 20 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.06 2.33 6.09 -2.39 -0.01 2.32 16 22 H 0.08 2.16 8.07 -2.38 -0.02 2.14 16 23 H 0.09 2.95 8.07 -2.39 -0.02 2.93 16 24 H 0.03 1.63 7.42 -2.38 -0.02 1.61 16 25 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 Total: -1.00 -77.72 276.69 4.20 -73.52 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 1.14 Total: 14.17 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 4.61 Total: -3.82 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.19 Total: -83.57 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.06 Total: -43.30 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -1.32 Total: -0.14 kcal Total: -77.72 4.20 -73.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086442069.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.041 kcal (2) G-P(sol) polarization free energy of solvation -77.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds