Wall clock time and date at job start Sun Mar 29 2020 22:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47161 * 2 1 4 4 C 1.36972 * 120.00388 * 264.19662 * 3 2 1 5 5 H 1.08006 * 120.00509 * 185.26058 * 4 3 2 6 6 C 1.38973 * 119.99836 * 5.25789 * 4 3 2 7 7 N 1.31413 * 120.00031 * 34.43563 * 6 4 3 8 8 Si 1.86804 * 120.00106 * 214.43772 * 6 4 3 9 9 H 1.48502 * 109.46929 * 94.99681 * 8 6 4 10 10 H 1.48501 * 109.47138 * 214.99978 * 8 6 4 11 11 H 1.48500 * 109.46914 * 335.00168 * 8 6 4 12 12 C 1.34777 * 119.99961 * 84.19680 * 3 2 1 13 13 O 1.21666 * 120.00167 * 185.75420 * 12 3 2 14 14 C 1.47104 * 119.99859 * 5.75149 * 12 3 2 15 15 C 1.36100 * 123.47360 * 54.44859 * 14 12 3 16 16 S 1.70441 * 110.81120 * 180.02562 * 15 14 12 17 17 C 1.75498 * 92.45246 * 359.97438 * 16 15 14 18 18 C 1.32759 * 110.59593 * 359.97438 * 17 16 15 19 19 C 1.50703 * 123.45806 * 179.73381 * 18 17 16 20 20 H 1.08998 * 109.47849 * 59.99606 * 1 2 3 21 21 H 1.08994 * 109.47459 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46971 * 299.99700 * 1 2 3 23 23 H 1.09001 * 109.47255 * 240.00554 * 2 1 3 24 24 H 1.08998 * 109.47849 * 120.00394 * 2 1 3 25 25 H 0.97001 * 120.00643 * 179.97438 * 7 6 4 26 26 H 1.08000 * 124.59209 * 359.97438 * 15 14 12 27 27 H 1.08004 * 124.70426 * 180.02562 * 17 16 15 28 28 H 1.08998 * 109.47166 * 90.02287 * 19 18 17 29 29 H 1.08997 * 109.46598 * 210.02780 * 19 18 17 30 30 H 1.08998 * 109.46718 * 330.02310 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3597 1.9870 -1.1801 5 1 2.7992 2.9736 -1.1734 6 6 2.1406 1.3321 -2.3861 7 7 1.0945 0.5495 -2.5283 8 14 3.3330 1.5644 -3.8052 9 1 4.3321 0.4657 -3.7970 10 1 2.5856 1.5443 -5.0882 11 1 4.0294 2.8677 -3.6582 12 6 2.1316 2.0559 1.1612 13 8 2.4363 3.2338 1.1532 14 6 1.8869 1.3681 2.4384 15 6 2.5276 0.2267 2.8111 16 16 1.9985 -0.2910 4.3463 17 6 0.8858 1.0573 4.5009 18 6 0.9425 1.8351 3.4265 19 6 0.1020 3.0738 3.2523 20 1 -0.3635 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 0.9413 0.0927 -3.3702 26 1 3.2701 -0.2824 2.2145 27 1 0.2444 1.2307 5.3524 28 1 0.6354 3.9345 3.6556 29 1 -0.0954 3.2326 2.1922 30 1 -0.8419 2.9499 3.7830 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086788149.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:46 Heat of formation + Delta-G solvation = -11.769799 kcal Electronic energy + Delta-G solvation = -15330.946926 eV Core-core repulsion = 12831.727884 eV Total energy + Delta-G solvation = -2499.219042 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.80714 -38.11443 -36.91896 -33.95948 -31.93301 -31.26787 -28.71573 -27.04438 -24.97256 -23.71043 -21.79157 -19.33020 -18.89180 -18.30914 -17.67576 -16.62703 -16.15937 -15.46534 -15.25656 -14.70119 -14.56977 -14.15728 -14.04065 -13.82782 -13.34154 -13.25245 -12.91011 -12.84397 -12.74440 -12.59119 -12.17240 -12.14019 -11.83595 -11.66909 -10.85936 -10.39461 -9.88208 -9.62253 -9.04152 -8.48176 -5.82761 0.03420 0.79545 1.04769 1.25666 1.39607 1.44089 1.54441 2.12032 2.29930 2.98066 3.14895 3.87997 4.05136 4.30574 4.44502 4.46517 4.65979 4.73917 4.76692 4.83478 4.96352 5.01406 5.06512 5.32304 5.37324 5.40519 5.57510 5.81465 6.03920 6.49017 7.14118 7.44136 8.04757 8.53745 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.007905 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.857236 B = 3541.313737 C = 3709.930935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.117 3.883 3 N -0.435 5.435 4 C -0.365 4.365 5 H 0.072 0.928 6 C 0.017 3.983 7 N -0.849 5.849 8 Si 0.974 3.026 9 H -0.265 1.265 10 H -0.271 1.271 11 H -0.279 1.279 12 C 0.478 3.522 13 O -0.640 6.640 14 C -0.136 4.136 15 C -0.243 4.243 16 S 0.227 5.773 17 C -0.227 4.227 18 C -0.095 4.095 19 C -0.083 4.083 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.026 0.974 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.278 0.722 26 H 0.166 0.834 27 H 0.200 0.800 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 -7.020 10.766 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.006 4.006 3 N -0.151 5.151 4 C -0.492 4.492 5 H 0.090 0.910 6 C -0.189 4.189 7 N -0.485 5.485 8 Si 0.798 3.202 9 H -0.190 1.190 10 H -0.197 1.197 11 H -0.204 1.204 12 C 0.267 3.733 13 O -0.530 6.530 14 C -0.154 4.154 15 C -0.380 4.380 16 S 0.493 5.507 17 C -0.362 4.362 18 C -0.107 4.107 19 C -0.142 4.142 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.045 0.955 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.183 0.817 27 H 0.217 0.783 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.456 -7.877 11.505 14.019 hybrid contribution 0.223 1.655 -2.164 2.733 sum -1.232 -6.222 9.341 11.291 Atomic orbital electron populations 1.21919 0.95665 1.01194 1.00703 1.21605 0.95427 0.82290 1.01242 1.43979 1.53903 1.12291 1.04922 1.19532 1.41382 1.04197 0.84078 0.91007 1.25852 0.96577 0.96411 1.00066 1.70256 1.21520 1.29299 1.27417 0.85241 0.79043 0.78780 0.77173 1.19004 1.19651 1.20429 1.17933 0.85028 0.86148 0.84166 1.90549 1.56726 1.17909 1.87863 1.20267 1.01445 0.97235 0.96444 1.25610 1.07162 1.00786 1.04477 1.82251 1.33792 1.24888 1.09730 1.25562 1.07373 1.00109 1.03128 1.19944 0.98259 0.99245 0.93282 1.20365 0.98890 0.93856 1.01112 0.91951 0.91406 0.95525 0.90587 0.91141 0.91153 0.81665 0.78260 0.91364 0.94974 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.88 9.77 71.98 0.70 -5.18 16 2 C 0.12 5.34 5.10 86.38 0.44 5.79 16 3 N -0.44 -23.49 2.63 -639.58 -1.68 -25.18 16 4 C -0.36 -21.31 9.36 84.07 0.79 -20.53 16 5 H 0.07 4.60 7.39 -2.91 -0.02 4.58 16 6 C 0.02 0.89 4.66 84.93 0.40 1.29 16 7 N -0.85 -43.31 9.16 21.67 0.20 -43.11 16 8 Si 0.97 41.76 29.67 68.60 2.04 43.79 16 9 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 10 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 C 0.48 25.72 6.56 86.57 0.57 26.29 16 13 O -0.64 -39.71 16.51 -4.24 -0.07 -39.78 16 14 C -0.14 -5.72 4.87 -19.87 -0.10 -5.82 16 15 C -0.24 -8.27 8.70 67.32 0.59 -7.68 16 16 S 0.23 5.41 23.02 -56.49 -1.30 4.11 16 17 C -0.23 -5.88 10.91 66.64 0.73 -5.15 16 18 C -0.10 -3.37 6.01 -19.46 -0.12 -3.49 16 19 C -0.08 -2.84 9.80 71.24 0.70 -2.14 16 20 H 0.06 3.07 6.35 -2.39 -0.02 3.06 16 21 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 22 H 0.03 1.11 7.97 -2.38 -0.02 1.09 16 23 H 0.08 3.65 5.97 -2.39 -0.01 3.63 16 24 H 0.07 2.80 4.72 -2.39 -0.01 2.79 16 25 H 0.28 13.07 8.31 -92.71 -0.77 12.30 16 26 H 0.17 5.42 7.45 -2.91 -0.02 5.40 16 27 H 0.20 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.03 1.32 7.68 -2.39 -0.02 1.30 16 30 H 0.10 2.48 8.13 -2.39 -0.02 2.46 16 Total: -1.00 -69.14 266.38 5.02 -64.12 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.15 Total: 12.67 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 4.69 Total: -16.62 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -1.49 Total: -68.29 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.07 Total: -39.78 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.04 Total: 43.79 kcal Atomic # 16 Polarization: 5.41 SS G_CDS: -1.30 Total: 4.11 kcal Total: -69.14 5.02 -64.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086788149.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.352 kcal (2) G-P(sol) polarization free energy of solvation -69.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds