Wall clock time and date at job start Sun Mar 29 2020 22:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35663 * 116.99673 * 2 1 4 4 C 1.38610 * 120.14343 * 0.28031 * 3 2 1 5 5 C 1.38148 * 120.16227 * 180.27919 * 4 3 2 6 6 C 1.38427 * 120.44466 * 359.71563 * 5 4 3 7 7 C 1.38115 * 120.27659 * 0.02562 * 6 5 4 8 8 F 1.35101 * 120.08355 * 179.97438 * 7 6 5 9 9 C 1.40018 * 119.82994 * 359.97438 * 7 6 5 10 10 C 1.47294 * 120.21650 * 180.02562 * 9 7 6 11 11 O 1.21633 * 119.99869 * 90.00611 * 10 9 7 12 12 N 1.34777 * 119.99893 * 270.00304 * 10 9 7 13 13 C 1.36929 * 119.99797 * 179.72296 * 12 10 9 14 14 H 1.08002 * 119.99647 * 0.27706 * 13 12 10 15 15 C 1.39009 * 119.99980 * 180.27673 * 13 12 10 16 16 N 1.31384 * 120.00017 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99896 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47234 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47403 * 120.00355 * 17 15 13 20 20 H 1.48503 * 109.47163 * 240.00152 * 17 15 13 21 21 H 1.08994 * 109.47178 * 299.99324 * 1 2 3 22 22 H 1.08996 * 109.47210 * 60.00359 * 1 2 3 23 23 H 1.08999 * 109.46848 * 179.97438 * 1 2 3 24 24 H 1.08004 * 119.91584 * 359.97438 * 4 3 2 25 25 H 1.08005 * 119.77624 * 179.70028 * 5 4 3 26 26 H 1.08009 * 119.86024 * 179.97438 * 6 5 4 27 27 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 28 28 H 0.97004 * 120.00396 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2928 2.3731 0.0059 5 6 1.9194 3.6043 0.0000 6 6 3.3012 3.6880 -0.0057 7 6 4.0684 2.5395 -0.0063 8 9 5.4166 2.6258 -0.0125 9 6 3.4453 1.2857 -0.0004 10 6 4.2552 0.0554 -0.0004 11 8 4.5937 -0.4498 1.0530 12 7 4.6211 -0.5105 -1.1676 13 6 5.3788 -1.6511 -1.1676 14 1 5.6794 -2.0996 -0.2322 15 6 5.7610 -2.2316 -2.3714 16 7 5.3957 -1.6856 -3.5092 17 14 6.7941 -3.7879 -2.3714 18 1 7.0698 -4.1990 -0.9712 19 1 6.0565 -4.8717 -3.0688 20 1 8.0768 -3.5306 -3.0740 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2142 2.3176 0.0100 25 1 1.3273 4.5075 -0.0002 26 1 3.7813 4.6555 -0.0107 27 1 4.3514 -0.1075 -2.0077 28 1 5.6621 -2.0909 -4.3493 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088080434.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:40 Heat of formation + Delta-G solvation = -91.930308 kcal Electronic energy + Delta-G solvation = -16738.654948 eV Core-core repulsion = 13669.746710 eV Total energy + Delta-G solvation = -3068.908239 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.54121 -40.00350 -37.83907 -36.84469 -33.90181 -31.43734 -30.60321 -29.74629 -27.25265 -25.24831 -23.12779 -21.98846 -19.77387 -18.22445 -17.89340 -16.71537 -16.45668 -15.74083 -15.70208 -15.11606 -14.91393 -14.43204 -14.37760 -13.91049 -13.13131 -12.84585 -12.49228 -12.25423 -12.18454 -11.57184 -11.52564 -11.07259 -11.05840 -10.91761 -10.31793 -10.21712 -9.50858 -8.71421 -8.39844 -8.09342 -7.95506 -6.40458 -3.79986 1.24203 1.43218 3.17536 3.28862 3.30408 3.37059 3.68693 3.82065 4.19281 4.52695 4.78237 4.92317 5.07442 5.15186 5.21335 5.30332 5.42080 5.48257 5.55810 5.91613 6.08768 6.30930 6.38063 6.43115 6.87043 7.49256 7.57218 8.06505 8.60948 9.17506 9.54142 10.05162 10.77102 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.027484 B = 0.007828 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.541641 B = 3576.127189 C = 4098.465453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.295 6.295 3 C 0.182 3.818 4 C -0.227 4.227 5 C -0.051 4.051 6 C -0.198 4.198 7 C 0.164 3.836 8 F -0.124 7.124 9 C -0.161 4.161 10 C 0.489 3.511 11 O -0.584 6.584 12 N -0.541 5.541 13 C -0.299 4.299 14 H 0.106 0.894 15 C 0.024 3.976 16 N -0.897 5.897 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.101 0.899 24 H 0.134 0.866 25 H 0.133 0.867 26 H 0.137 0.863 27 H 0.394 0.606 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 9.191 2.456 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.207 6.207 3 C 0.135 3.865 4 C -0.246 4.246 5 C -0.069 4.069 6 C -0.217 4.217 7 C 0.144 3.856 8 F -0.103 7.103 9 C -0.166 4.166 10 C 0.274 3.726 11 O -0.470 6.470 12 N -0.175 5.175 13 C -0.429 4.429 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.537 5.537 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.119 0.881 24 H 0.152 0.848 25 H 0.151 0.849 26 H 0.155 0.845 27 H 0.227 0.773 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.778 8.559 2.946 13.325 hybrid contribution 0.284 -0.311 -0.635 0.762 sum -9.495 8.248 2.310 12.787 Atomic orbital electron populations 1.23112 0.78393 1.04237 1.01087 1.86217 1.21164 1.25982 1.87329 1.18721 0.90276 0.84758 0.92785 1.21163 1.00196 0.91936 1.11318 1.20714 0.93377 0.97149 0.95666 1.20902 0.94291 0.97290 1.09257 1.17405 0.77249 0.92444 0.98537 1.91545 1.28683 1.96860 1.93166 1.19571 0.91969 0.94970 1.10128 1.17136 0.85221 0.85019 0.85262 1.90627 1.60039 1.64998 1.31316 1.41790 1.45421 1.23918 1.06340 1.19799 1.27086 1.01345 0.94623 0.87637 1.25312 0.98196 0.99713 0.94562 1.69626 1.45842 1.40668 0.97604 0.85765 0.79038 0.80659 0.78675 1.19080 1.20684 1.20656 0.92636 0.92516 0.88054 0.84787 0.84872 0.84537 0.77294 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 15 2 O -0.30 -5.48 9.95 -18.69 -0.19 -5.66 15 3 C 0.18 3.34 6.70 -38.69 -0.26 3.08 15 4 C -0.23 -3.08 9.03 -39.48 -0.36 -3.44 15 5 C -0.05 -0.62 10.03 -39.54 -0.40 -1.02 15 6 C -0.20 -2.85 10.00 -39.56 -0.40 -3.24 15 7 C 0.16 3.14 7.29 -38.96 -0.28 2.86 15 8 F -0.12 -2.58 16.83 2.25 0.04 -2.55 15 9 C -0.16 -3.50 5.64 -104.79 -0.59 -4.10 15 10 C 0.49 13.16 6.38 -12.58 -0.08 13.08 15 11 O -0.58 -17.79 16.68 5.25 0.09 -17.70 15 12 N -0.54 -15.05 5.28 -11.99 -0.06 -15.11 15 13 C -0.30 -8.78 9.68 -14.99 -0.15 -8.92 15 14 H 0.11 3.23 7.15 -52.49 -0.38 2.85 15 15 C 0.02 0.67 5.50 -17.46 -0.10 0.58 15 16 N -0.90 -25.17 13.05 55.50 0.72 -24.45 15 17 Si 0.93 21.55 29.55 -169.99 -5.02 16.52 15 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 21 H 0.06 0.54 7.65 -51.93 -0.40 0.14 15 22 H 0.06 0.56 7.67 -51.93 -0.40 0.16 15 23 H 0.10 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.13 1.35 6.29 -52.48 -0.33 1.02 15 25 H 0.13 1.09 8.06 -52.48 -0.42 0.67 15 26 H 0.14 1.56 8.06 -52.48 -0.42 1.14 15 27 H 0.39 10.63 7.88 -40.82 -0.32 10.30 15 28 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 261.93 15.07 3.95 3.95 Total: -1.00 -34.47 261.93 -4.31 -38.78 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -2.23 Total: 6.04 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.61 Total: 0.18 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.66 Total: -39.56 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.10 Total: -23.36 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -34.47 -4.31 -38.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088080434.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.148 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds