Wall clock time and date at job start Sun Mar 29 2020 22:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35663 * 116.99673 * 2 1 4 4 C 1.38610 * 120.14343 * 0.28031 * 3 2 1 5 5 C 1.38148 * 120.16227 * 180.27919 * 4 3 2 6 6 C 1.38427 * 120.44466 * 359.71563 * 5 4 3 7 7 C 1.38115 * 120.27659 * 0.02562 * 6 5 4 8 8 F 1.35101 * 120.08355 * 179.97438 * 7 6 5 9 9 C 1.40018 * 119.82994 * 359.97438 * 7 6 5 10 10 C 1.47294 * 120.21650 * 180.02562 * 9 7 6 11 11 O 1.21633 * 119.99869 * 90.00611 * 10 9 7 12 12 N 1.34777 * 119.99893 * 270.00304 * 10 9 7 13 13 C 1.36929 * 119.99797 * 179.72296 * 12 10 9 14 14 H 1.08002 * 119.99647 * 0.27706 * 13 12 10 15 15 C 1.39009 * 119.99980 * 180.27673 * 13 12 10 16 16 N 1.31384 * 120.00017 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99896 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47234 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47403 * 120.00355 * 17 15 13 20 20 H 1.48503 * 109.47163 * 240.00152 * 17 15 13 21 21 H 1.08994 * 109.47178 * 299.99324 * 1 2 3 22 22 H 1.08996 * 109.47210 * 60.00359 * 1 2 3 23 23 H 1.08999 * 109.46848 * 179.97438 * 1 2 3 24 24 H 1.08004 * 119.91584 * 359.97438 * 4 3 2 25 25 H 1.08005 * 119.77624 * 179.70028 * 5 4 3 26 26 H 1.08009 * 119.86024 * 179.97438 * 6 5 4 27 27 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 28 28 H 0.97004 * 120.00396 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2928 2.3731 0.0059 5 6 1.9194 3.6043 0.0000 6 6 3.3012 3.6880 -0.0057 7 6 4.0684 2.5395 -0.0063 8 9 5.4166 2.6258 -0.0125 9 6 3.4453 1.2857 -0.0004 10 6 4.2552 0.0554 -0.0004 11 8 4.5937 -0.4498 1.0530 12 7 4.6211 -0.5105 -1.1676 13 6 5.3788 -1.6511 -1.1676 14 1 5.6794 -2.0996 -0.2322 15 6 5.7610 -2.2316 -2.3714 16 7 5.3957 -1.6856 -3.5092 17 14 6.7941 -3.7879 -2.3714 18 1 7.0698 -4.1990 -0.9712 19 1 6.0565 -4.8717 -3.0688 20 1 8.0768 -3.5306 -3.0740 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2142 2.3176 0.0100 25 1 1.3273 4.5075 -0.0002 26 1 3.7813 4.6555 -0.0107 27 1 4.3514 -0.1075 -2.0077 28 1 5.6621 -2.0909 -4.3493 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088080434.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:40 Heat of formation + Delta-G solvation = -117.958273 kcal Electronic energy + Delta-G solvation = -16739.783606 eV Core-core repulsion = 13669.746710 eV Total energy + Delta-G solvation = -3070.036896 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.03168 -41.34173 -39.76891 -38.11765 -36.09358 -33.47340 -32.12235 -30.93711 -28.27635 -27.26576 -24.66689 -23.21333 -21.56966 -20.18524 -19.42060 -18.20883 -18.04692 -17.10310 -17.04040 -16.78506 -16.42157 -16.02071 -15.79245 -15.59711 -15.05999 -14.66570 -13.79919 -13.65752 -13.37265 -13.30987 -12.98881 -12.71289 -12.51330 -12.22121 -12.14324 -11.97273 -11.62370 -10.65944 -10.14485 -9.87834 -9.33667 -8.55654 -6.06260 -0.03300 0.22565 1.30926 1.37560 1.54008 1.84203 2.17392 2.25159 2.49679 3.05124 3.10079 3.33995 3.83465 4.02145 4.07667 4.22348 4.32007 4.39747 4.41564 4.71572 4.87734 5.07595 5.12106 5.26479 5.32034 5.70403 5.86943 6.35963 6.44326 6.98456 7.37964 7.92832 8.62335 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.027484 B = 0.007828 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.541641 B = 3576.127189 C = 4098.465453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.342 6.342 3 C 0.168 3.832 4 C -0.209 4.209 5 C -0.024 4.024 6 C -0.184 4.184 7 C 0.133 3.867 8 F -0.148 7.148 9 C -0.215 4.215 10 C 0.487 3.513 11 O -0.637 6.637 12 N -0.548 5.548 13 C -0.344 4.344 14 H 0.080 0.920 15 C -0.009 4.009 16 N -0.916 5.916 17 Si 1.002 2.998 18 H -0.273 1.273 19 H -0.264 1.264 20 H -0.266 1.266 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.108 0.892 24 H 0.179 0.821 25 H 0.194 0.806 26 H 0.172 0.828 27 H 0.394 0.606 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.361 11.062 1.757 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.255 6.255 3 C 0.121 3.879 4 C -0.227 4.227 5 C -0.041 4.041 6 C -0.203 4.203 7 C 0.113 3.887 8 F -0.126 7.126 9 C -0.220 4.220 10 C 0.275 3.725 11 O -0.526 6.526 12 N -0.181 5.181 13 C -0.473 4.473 14 H 0.098 0.902 15 C -0.209 4.209 16 N -0.555 5.555 17 Si 0.824 3.176 18 H -0.197 1.197 19 H -0.189 1.189 20 H -0.190 1.190 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.126 0.874 24 H 0.197 0.803 25 H 0.211 0.789 26 H 0.189 0.811 27 H 0.227 0.773 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.978 10.453 2.216 16.051 hybrid contribution 0.817 -0.811 -0.427 1.228 sum -11.160 9.643 1.789 14.857 Atomic orbital electron populations 1.23503 0.75181 1.05719 1.03442 1.86150 1.24695 1.27140 1.87539 1.18952 0.89231 0.86417 0.93320 1.21680 1.02073 0.90438 1.08516 1.21454 0.92589 0.98707 0.91373 1.21366 0.95213 0.96665 1.07039 1.17888 0.76741 0.93325 1.00754 1.91474 1.30525 1.96963 1.93668 1.19393 0.93436 0.93291 1.15857 1.18002 0.84372 0.86141 0.84004 1.90547 1.62021 1.67177 1.32827 1.41863 1.45606 1.23866 1.06771 1.19792 1.29758 1.03171 0.94556 0.90223 1.26224 0.98548 1.02634 0.93540 1.69686 1.45845 1.41812 0.98195 0.84759 0.77771 0.76555 0.78494 1.19720 1.18860 1.19038 0.90060 0.90079 0.87360 0.80335 0.78880 0.81096 0.77270 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 15 2 O -0.34 -12.81 9.95 -89.79 -0.89 -13.71 15 3 C 0.17 6.07 6.70 22.85 0.15 6.23 15 4 C -0.21 -4.76 9.03 22.34 0.20 -4.56 15 5 C -0.02 -0.44 10.03 22.29 0.22 -0.22 15 6 C -0.18 -4.68 10.00 22.29 0.22 -4.45 15 7 C 0.13 5.16 7.29 22.67 0.17 5.32 15 8 F -0.15 -6.46 16.83 44.97 0.76 -5.70 15 9 C -0.21 -9.71 5.64 -19.97 -0.11 -9.82 15 10 C 0.49 28.16 6.38 86.62 0.55 28.71 15 11 O -0.64 -41.89 16.68 -4.14 -0.07 -41.96 15 12 N -0.55 -32.56 5.28 -310.09 -1.64 -34.20 15 13 C -0.34 -21.40 9.68 84.08 0.81 -20.59 15 14 H 0.08 5.26 7.15 -2.91 -0.02 5.24 15 15 C -0.01 -0.51 5.50 84.94 0.47 -0.04 15 16 N -0.92 -52.15 13.05 21.67 0.28 -51.86 15 17 Si 1.00 44.84 29.55 68.60 2.03 46.87 15 18 H -0.27 -12.37 7.11 99.48 0.71 -11.67 15 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 15 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 21 H 0.08 1.29 7.65 -2.39 -0.02 1.27 15 22 H 0.08 1.31 7.67 -2.39 -0.02 1.29 15 23 H 0.11 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.18 2.45 6.29 -2.91 -0.02 2.43 15 25 H 0.19 1.45 8.06 -2.91 -0.02 1.42 15 26 H 0.17 3.12 8.06 -2.91 -0.02 3.10 15 27 H 0.39 22.65 7.88 -92.71 -0.73 21.92 15 28 H 0.28 14.72 8.31 -92.71 -0.77 13.95 15 Total: -1.00 -83.13 261.93 4.75 -78.38 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.48 Total: 20.17 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 3.80 Total: 2.01 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -1.35 Total: -86.06 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -0.96 Total: -55.67 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.76 Total: -5.70 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -83.13 4.75 -78.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088080434.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.579 kcal (2) G-P(sol) polarization free energy of solvation -83.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds