Wall clock time and date at job start Sun Mar 29 2020 22:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.50709 * 109.47158 * 119.99158 * 2 1 3 5 5 H 1.08003 * 119.99088 * 119.99615 * 4 2 1 6 6 C 1.37865 * 120.00189 * 300.00544 * 4 2 1 7 7 N 1.31519 * 120.00293 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00104 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47042 * 89.99849 * 8 6 4 10 10 H 1.48498 * 109.47153 * 209.99948 * 8 6 4 11 11 H 1.48506 * 109.46933 * 330.00289 * 8 6 4 12 12 N 1.46499 * 109.47277 * 239.99707 * 2 1 3 13 13 C 1.38315 * 119.99886 * 84.99945 * 12 2 1 14 14 N 1.31631 * 127.49966 * 179.70889 * 13 12 2 15 15 C 1.31288 * 116.78952 * 179.78193 * 14 13 12 16 16 C 1.50710 * 121.06270 * 180.25385 * 15 14 13 17 17 C 1.53000 * 117.49813 * 189.01851 * 16 15 14 18 18 C 1.52996 * 117.49701 * 120.35783 * 16 15 14 19 19 N 1.30123 * 117.87698 * 0.54548 * 15 14 13 20 20 S 1.69952 * 105.76261 * 359.71204 * 19 15 14 21 21 H 1.08992 * 109.47084 * 60.00162 * 1 2 3 22 22 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46997 * 300.00209 * 1 2 3 24 24 H 0.97001 * 119.99836 * 179.97438 * 7 6 4 25 25 H 0.97000 * 119.99441 * 265.27409 * 12 2 1 26 26 H 1.08999 * 115.54874 * 334.69291 * 16 15 14 27 27 H 1.09001 * 117.49955 * 0.02562 * 17 16 15 28 28 H 1.08999 * 117.49370 * 145.02302 * 17 16 15 29 29 H 1.09007 * 117.50266 * 214.98313 * 18 16 15 30 30 H 1.09007 * 117.49734 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9435 0.8304 2.6034 8 14 2.3214 -1.1200 4.0081 9 1 3.6297 -0.5454 4.4125 10 1 1.3431 -0.9488 5.1121 11 1 2.4860 -2.5659 3.7122 12 7 2.0184 -0.6907 -1.1961 13 6 2.1505 -0.0007 -2.3876 14 7 2.5764 -0.4689 -3.5417 15 6 2.6138 0.3763 -4.5457 16 6 3.0799 -0.0586 -5.9113 17 6 3.2929 1.0302 -6.9649 18 6 2.0943 0.0842 -7.0728 19 7 2.2410 1.6028 -4.3226 20 16 1.8005 1.6604 -2.6822 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7088 1.1616 3.4844 25 1 2.2453 -1.6328 -1.1534 26 1 3.7560 -0.9135 -5.9271 27 1 3.0963 2.0610 -6.6702 28 1 4.1089 0.8914 -7.6741 29 1 2.1222 -0.6765 -7.8530 30 1 1.1086 0.4923 -6.8491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092640074.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:52 Heat of formation + Delta-G solvation = 71.283084 kcal Electronic energy + Delta-G solvation = -14364.006641 eV Core-core repulsion = 11900.681793 eV Total energy + Delta-G solvation = -2463.324848 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.76441 -37.03348 -35.92726 -33.02831 -30.85839 -28.75321 -25.71036 -25.31485 -22.37223 -21.99810 -21.08292 -19.25930 -18.15731 -16.91565 -15.91897 -15.61422 -15.11730 -14.78925 -14.28682 -13.81548 -12.85724 -12.46318 -12.42872 -11.63611 -11.48410 -11.22954 -11.15313 -11.02815 -10.93178 -10.74403 -10.50666 -10.44485 -10.36214 -10.14341 -9.36357 -9.04060 -8.83796 -8.65943 -7.37683 -6.35299 -4.45980 1.37220 1.66183 2.39652 3.09056 3.14709 3.21748 3.23555 3.52148 4.04134 4.19491 4.57992 4.90290 4.98596 5.03474 5.32948 5.63345 5.69227 5.97716 6.15872 6.20142 6.35501 6.43390 6.65316 6.69950 6.99095 7.38701 7.46171 7.60262 7.83419 8.13692 8.36603 8.60956 9.22335 10.70920 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.059445 B = 0.005289 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.907742 B = 5292.723625 C = 5487.834581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.262 3.738 3 H 0.050 0.950 4 C -0.539 4.539 5 H 0.067 0.933 6 C 0.071 3.929 7 N -0.882 5.882 8 Si 0.908 3.092 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.635 5.635 13 C 0.357 3.643 14 N -0.609 5.609 15 C 0.334 3.666 16 C -0.075 4.075 17 C -0.159 4.159 18 C -0.159 4.159 19 N -0.531 5.531 20 S 0.169 5.831 21 H 0.017 0.983 22 H 0.036 0.964 23 H 0.100 0.900 24 H 0.269 0.731 25 H 0.407 0.593 26 H 0.127 0.873 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.563 -0.954 -11.144 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.577 4.577 5 H 0.085 0.915 6 C -0.134 4.134 7 N -0.518 5.518 8 Si 0.735 3.265 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.268 5.268 13 C -0.023 4.023 14 N -0.348 5.348 15 C 0.045 3.955 16 C -0.098 4.098 17 C -0.197 4.197 18 C -0.198 4.198 19 N -0.365 5.365 20 S 0.302 5.698 21 H 0.036 0.964 22 H 0.056 0.944 23 H 0.119 0.881 24 H 0.079 0.921 25 H 0.245 0.755 26 H 0.145 0.855 27 H 0.125 0.875 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.132 0.474 -10.887 10.956 hybrid contribution 0.636 -1.802 0.869 2.099 sum 1.769 -1.328 -10.018 10.260 Atomic orbital electron populations 1.22224 0.97400 1.00391 1.01475 1.19244 0.91740 0.93528 0.79407 0.93263 1.21054 1.33278 1.13862 0.89512 0.91460 1.24862 0.94436 0.94894 0.99177 1.69861 1.35247 1.22198 1.24518 0.86327 0.78692 0.79896 0.81570 1.20323 1.20848 1.19657 1.45244 1.64031 1.12927 1.04588 1.25336 0.91144 0.95736 0.90089 1.67258 1.33016 1.36235 0.98317 1.21945 0.93916 0.85058 0.94582 1.20299 1.03989 1.01982 0.83566 1.23024 0.99863 0.96769 1.00008 1.22999 0.95395 1.02606 0.98762 1.77273 1.31764 1.20946 1.06568 1.85043 1.67062 1.10178 1.07473 0.96389 0.94445 0.88144 0.92135 0.75538 0.85544 0.87529 0.88281 0.88107 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 9.27 37.16 0.34 -3.13 16 2 C 0.26 6.03 2.59 -69.08 -0.18 5.85 16 3 H 0.05 1.23 7.43 -51.93 -0.39 0.85 16 4 C -0.54 -13.34 8.73 -34.44 -0.30 -13.64 16 5 H 0.07 1.62 7.74 -52.48 -0.41 1.22 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -22.89 11.32 55.43 0.63 -22.26 16 8 Si 0.91 19.59 29.54 -169.99 -5.02 14.57 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 12 N -0.63 -13.05 5.21 -56.19 -0.29 -13.35 16 13 C 0.36 7.28 8.54 -86.36 -0.74 6.54 16 14 N -0.61 -12.10 10.61 -14.58 -0.15 -12.26 16 15 C 0.33 6.13 7.22 -159.04 -1.15 4.98 16 16 C -0.08 -1.05 6.28 -91.77 -0.58 -1.63 16 17 C -0.16 -1.84 10.05 -26.69 -0.27 -2.10 16 18 C -0.16 -1.83 10.24 -26.69 -0.27 -2.10 16 19 N -0.53 -10.12 11.31 29.54 0.33 -9.79 16 20 S 0.17 3.32 22.72 -107.50 -2.44 0.88 16 21 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 24 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 25 H 0.41 7.83 8.67 -40.82 -0.35 7.48 16 26 H 0.13 1.61 8.14 -51.93 -0.42 1.18 16 27 H 0.11 1.38 7.65 -51.93 -0.40 0.99 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 LS Contribution 274.97 15.07 4.14 4.14 Total: -1.00 -26.52 274.97 -9.57 -36.09 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -3.53 Total: 5.52 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -3.23 Total: -3.55 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.51 Total: -57.65 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.44 Total: 0.88 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.52 -9.57 -36.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092640074.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.372 kcal (2) G-P(sol) polarization free energy of solvation -26.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds