Wall clock time and date at job start Sun Mar 29 2020 22:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.50709 * 109.47158 * 119.99158 * 2 1 3 5 5 H 1.08003 * 119.99088 * 119.99615 * 4 2 1 6 6 C 1.37865 * 120.00189 * 300.00544 * 4 2 1 7 7 N 1.31519 * 120.00293 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00104 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47042 * 89.99849 * 8 6 4 10 10 H 1.48498 * 109.47153 * 209.99948 * 8 6 4 11 11 H 1.48506 * 109.46933 * 330.00289 * 8 6 4 12 12 N 1.46499 * 109.47277 * 239.99707 * 2 1 3 13 13 C 1.38315 * 119.99886 * 84.99945 * 12 2 1 14 14 N 1.31631 * 127.49966 * 179.70889 * 13 12 2 15 15 C 1.31288 * 116.78952 * 179.78193 * 14 13 12 16 16 C 1.50710 * 121.06270 * 180.25385 * 15 14 13 17 17 C 1.53000 * 117.49813 * 189.01851 * 16 15 14 18 18 C 1.52996 * 117.49701 * 120.35783 * 16 15 14 19 19 N 1.30123 * 117.87698 * 0.54548 * 15 14 13 20 20 S 1.69952 * 105.76261 * 359.71204 * 19 15 14 21 21 H 1.08992 * 109.47084 * 60.00162 * 1 2 3 22 22 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46997 * 300.00209 * 1 2 3 24 24 H 0.97001 * 119.99836 * 179.97438 * 7 6 4 25 25 H 0.97000 * 119.99441 * 265.27409 * 12 2 1 26 26 H 1.08999 * 115.54874 * 334.69291 * 16 15 14 27 27 H 1.09001 * 117.49955 * 0.02562 * 17 16 15 28 28 H 1.08999 * 117.49370 * 145.02302 * 17 16 15 29 29 H 1.09007 * 117.50266 * 214.98313 * 18 16 15 30 30 H 1.09007 * 117.49734 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9435 0.8304 2.6034 8 14 2.3214 -1.1200 4.0081 9 1 3.6297 -0.5454 4.4125 10 1 1.3431 -0.9488 5.1121 11 1 2.4860 -2.5659 3.7122 12 7 2.0184 -0.6907 -1.1961 13 6 2.1505 -0.0007 -2.3876 14 7 2.5764 -0.4689 -3.5417 15 6 2.6138 0.3763 -4.5457 16 6 3.0799 -0.0586 -5.9113 17 6 3.2929 1.0302 -6.9649 18 6 2.0943 0.0842 -7.0728 19 7 2.2410 1.6028 -4.3226 20 16 1.8005 1.6604 -2.6822 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7088 1.1616 3.4844 25 1 2.2453 -1.6328 -1.1534 26 1 3.7560 -0.9135 -5.9271 27 1 3.0963 2.0610 -6.6702 28 1 4.1089 0.8914 -7.6741 29 1 2.1222 -0.6765 -7.8530 30 1 1.1086 0.4923 -6.8491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092640074.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:52 Heat of formation + Delta-G solvation = 56.797380 kcal Electronic energy + Delta-G solvation = -14364.634788 eV Core-core repulsion = 11900.681793 eV Total energy + Delta-G solvation = -2463.952995 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.21489 -38.48742 -37.28433 -34.82624 -32.48700 -30.47802 -27.48909 -26.81424 -23.53438 -23.22078 -22.81391 -20.61392 -19.70976 -18.68022 -17.58416 -16.94274 -16.77080 -16.29598 -15.55921 -15.33277 -14.64936 -14.19081 -13.67073 -13.32854 -13.00149 -12.80637 -12.63069 -12.52290 -12.41086 -12.28262 -12.19266 -12.04733 -11.49569 -11.38081 -11.19814 -10.66064 -10.59384 -10.27465 -8.99640 -8.25602 -6.42546 -0.17616 0.08735 0.89791 1.44856 1.46490 1.55802 1.66845 1.94140 2.40903 3.00011 3.06545 3.27049 3.89459 4.09584 4.22342 4.46145 4.55841 4.78752 4.80569 4.84888 4.92139 5.02585 5.16192 5.22429 5.30555 5.51803 5.63318 5.83589 5.99537 6.43049 6.64094 6.89020 7.29302 8.80304 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.059445 B = 0.005289 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.907742 B = 5292.723625 C = 5487.834581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.270 3.730 3 H 0.026 0.974 4 C -0.554 4.554 5 H 0.070 0.930 6 C 0.027 3.973 7 N -0.907 5.907 8 Si 0.969 3.031 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.266 1.266 12 N -0.634 5.634 13 C 0.349 3.651 14 N -0.615 5.615 15 C 0.329 3.671 16 C -0.103 4.103 17 C -0.144 4.144 18 C -0.143 4.143 19 N -0.535 5.535 20 S 0.154 5.846 21 H 0.027 0.973 22 H 0.040 0.960 23 H 0.080 0.920 24 H 0.270 0.730 25 H 0.413 0.587 26 H 0.141 0.859 27 H 0.089 0.911 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.194 -1.894 -12.367 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.168 3.832 3 H 0.044 0.956 4 C -0.592 4.592 5 H 0.088 0.912 6 C -0.174 4.174 7 N -0.545 5.545 8 Si 0.794 3.206 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.190 1.190 12 N -0.268 5.268 13 C -0.031 4.031 14 N -0.354 5.354 15 C 0.041 3.959 16 C -0.126 4.126 17 C -0.182 4.182 18 C -0.182 4.182 19 N -0.369 5.369 20 S 0.287 5.713 21 H 0.046 0.954 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.079 0.921 25 H 0.252 0.748 26 H 0.159 0.841 27 H 0.107 0.893 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.769 -0.469 -12.142 12.279 hybrid contribution 0.454 -1.478 1.135 1.919 sum 2.223 -1.947 -11.007 11.396 Atomic orbital electron populations 1.22057 0.96993 1.00387 1.00922 1.18957 0.91950 0.92371 0.79912 0.95589 1.21354 1.33395 1.14081 0.90353 0.91167 1.25612 0.94564 0.95491 1.01774 1.69968 1.36095 1.23286 1.25123 0.85378 0.77949 0.79025 0.78231 1.20300 1.20643 1.19002 1.44937 1.64655 1.13061 1.04197 1.25446 0.91407 0.95957 0.90262 1.67344 1.32933 1.36718 0.98360 1.22743 0.92740 0.84538 0.95924 1.20588 1.06162 1.03871 0.81989 1.23113 1.00927 0.95241 0.98921 1.23114 0.94383 1.02993 0.97665 1.77349 1.32450 1.21464 1.05671 1.85062 1.67430 1.10246 1.08540 0.95444 0.94052 0.90103 0.92063 0.74837 0.84085 0.89258 0.85015 0.84835 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.48 9.27 71.98 0.67 -5.81 16 2 C 0.27 12.55 2.59 44.25 0.11 12.67 16 3 H 0.03 1.34 7.43 -2.39 -0.02 1.32 16 4 C -0.55 -27.38 8.73 25.60 0.22 -27.15 16 5 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 6 C 0.03 1.37 5.30 84.65 0.45 1.82 16 7 N -0.91 -47.45 11.32 21.44 0.24 -47.21 16 8 Si 0.97 39.80 29.54 68.60 2.03 41.83 16 9 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 10 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 12 N -0.63 -26.08 5.21 -331.69 -1.73 -27.80 16 13 C 0.35 14.21 8.54 178.86 1.53 15.73 16 14 N -0.61 -23.98 10.61 -200.05 -2.12 -26.10 16 15 C 0.33 11.72 7.22 139.40 1.01 12.73 16 16 C -0.10 -2.65 6.28 -11.54 -0.07 -2.72 16 17 C -0.14 -2.93 10.05 30.62 0.31 -2.62 16 18 C -0.14 -2.87 10.24 30.62 0.31 -2.55 16 19 N -0.53 -20.15 11.31 -60.46 -0.68 -20.84 16 20 S 0.15 6.09 22.72 -56.49 -1.28 4.81 16 21 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.08 3.98 6.07 -2.39 -0.01 3.96 16 24 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 25 H 0.41 15.78 8.67 -92.71 -0.80 14.98 16 26 H 0.14 3.20 8.14 -2.39 -0.02 3.18 16 27 H 0.09 2.16 7.65 -2.39 -0.02 2.14 16 28 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -55.78 274.97 1.35 -54.43 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.36 Total: 18.79 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 4.54 Total: 2.09 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -4.29 Total: -121.95 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -1.28 Total: 4.81 kcal Total: -55.78 1.35 -54.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092640074.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.229 kcal (2) G-P(sol) polarization free energy of solvation -55.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds