Wall clock time and date at job start Sun Mar 29 2020 22:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47261 * 2 1 4 4 C 1.50704 * 109.47238 * 239.99895 * 2 1 3 5 5 H 1.07994 * 120.00560 * 245.46470 * 4 2 1 6 6 C 1.37881 * 119.99621 * 65.46431 * 4 2 1 7 7 N 1.31515 * 120.00192 * 9.55486 * 6 4 2 8 8 Si 1.86800 * 119.99915 * 189.56057 * 6 4 2 9 9 H 1.48508 * 109.47275 * 84.99137 * 8 6 4 10 10 H 1.48496 * 109.47295 * 204.99222 * 8 6 4 11 11 H 1.48497 * 109.46940 * 324.99531 * 8 6 4 12 12 N 1.46498 * 109.47103 * 120.00352 * 2 1 3 13 13 C 1.38313 * 119.99961 * 275.27649 * 12 2 1 14 14 N 1.31632 * 127.50695 * 179.43086 * 13 12 2 15 15 C 1.31290 * 116.79398 * 179.77919 * 14 13 12 16 16 C 1.50708 * 121.05969 * 180.25504 * 15 14 13 17 17 C 1.52997 * 117.49381 * 189.01683 * 16 15 14 18 18 C 1.53001 * 117.49361 * 120.35894 * 16 15 14 19 19 N 1.30119 * 117.87529 * 0.54585 * 15 14 13 20 20 S 1.69954 * 105.76528 * 359.71150 * 19 15 14 21 21 H 1.09000 * 109.47525 * 183.66070 * 1 2 3 22 22 H 1.08999 * 109.47096 * 303.67371 * 1 2 3 23 23 H 1.09007 * 109.47260 * 63.66125 * 1 2 3 24 24 H 0.97001 * 120.00176 * 179.97438 * 7 6 4 25 25 H 0.97003 * 120.00403 * 94.99324 * 12 2 1 26 26 H 1.08997 * 115.54940 * 334.69211 * 16 15 14 27 27 H 1.09000 * 117.50302 * 0.02562 * 17 16 15 28 28 H 1.09000 * 117.49778 * 145.02305 * 17 16 15 29 29 H 1.08995 * 117.49867 * 214.97483 * 18 16 15 30 30 H 1.09004 * 117.50137 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1339 6 6 1.7946 -0.1773 -2.4796 7 7 1.2993 1.0357 -2.5935 8 14 2.1759 -1.1780 -4.0102 9 1 1.0239 -2.0609 -4.3242 10 1 2.4227 -0.2613 -5.1521 11 1 3.3843 -2.0073 -3.7710 12 7 2.0183 -0.6907 1.1961 13 6 2.1449 -0.0022 2.3890 14 7 2.5553 -0.4743 3.5472 15 6 2.5989 0.3726 4.5495 16 6 3.0594 -0.0638 5.9166 17 6 2.8804 0.9243 7.0709 18 6 4.2776 0.6455 6.5113 19 7 2.2265 1.5992 4.3263 20 16 1.7929 1.6585 2.6841 21 1 -0.3634 -1.0255 0.0656 22 1 -0.3633 0.5698 0.8552 23 1 -0.3634 0.4560 -0.9210 24 1 1.1324 1.4109 -3.4723 25 1 2.2489 -1.6319 1.1526 26 1 2.9365 -1.1240 6.1378 27 1 2.4292 1.8897 6.8418 28 1 2.6401 0.5141 8.0518 29 1 4.9559 0.0520 7.1243 30 1 4.7463 1.4274 5.9137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092640075.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:53 Heat of formation + Delta-G solvation = 70.037787 kcal Electronic energy + Delta-G solvation = -14358.306260 eV Core-core repulsion = 11894.927412 eV Total energy + Delta-G solvation = -2463.378848 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.76228 -37.03118 -35.92152 -32.99235 -30.88760 -28.84012 -25.70287 -25.29574 -22.36914 -22.00808 -21.11166 -19.25738 -18.15683 -16.92327 -15.89227 -15.60403 -15.09519 -14.83513 -14.28501 -13.76888 -12.87013 -12.54062 -12.40707 -11.68330 -11.51536 -11.20645 -11.16873 -10.99704 -10.91236 -10.80660 -10.59837 -10.43343 -10.37900 -10.12159 -9.40765 -9.04028 -8.82544 -8.64516 -7.38171 -6.37425 -4.44456 1.37423 1.66471 2.39840 3.09432 3.15225 3.22289 3.23446 3.52010 4.04662 4.19931 4.58158 4.90682 4.97698 5.03901 5.33120 5.64136 5.69266 5.98167 6.16440 6.20329 6.34693 6.39882 6.59457 6.63765 6.92996 7.34388 7.40774 7.60907 7.72433 8.13712 8.36888 8.61701 9.22339 10.71088 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.056606 B = 0.005331 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.525678 B = 5250.969634 C = 5460.632592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.260 3.740 3 H 0.057 0.943 4 C -0.542 4.542 5 H 0.067 0.933 6 C 0.073 3.927 7 N -0.879 5.879 8 Si 0.905 3.095 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.635 5.635 13 C 0.357 3.643 14 N -0.609 5.609 15 C 0.334 3.666 16 C -0.075 4.075 17 C -0.159 4.159 18 C -0.159 4.159 19 N -0.531 5.531 20 S 0.170 5.830 21 H 0.039 0.961 22 H 0.022 0.978 23 H 0.083 0.917 24 H 0.269 0.731 25 H 0.407 0.593 26 H 0.127 0.873 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 -1.149 11.066 11.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.159 3.841 3 H 0.074 0.926 4 C -0.580 4.580 5 H 0.086 0.914 6 C -0.132 4.132 7 N -0.515 5.515 8 Si 0.732 3.268 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.268 5.268 13 C -0.023 4.023 14 N -0.348 5.348 15 C 0.045 3.955 16 C -0.098 4.098 17 C -0.197 4.197 18 C -0.198 4.198 19 N -0.365 5.365 20 S 0.304 5.696 21 H 0.058 0.942 22 H 0.041 0.959 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.244 0.756 26 H 0.144 0.856 27 H 0.125 0.875 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.161 0.297 10.821 10.887 hybrid contribution 0.493 -1.858 -0.900 2.122 sum 1.654 -1.561 9.921 10.178 Atomic orbital electron populations 1.22160 0.97806 0.99823 1.01172 1.19246 0.91292 0.94084 0.79480 0.92574 1.21002 1.38149 1.09221 0.89624 0.91450 1.24866 0.94504 0.94676 0.99160 1.69941 1.43062 1.13616 1.24878 0.86399 0.78950 0.79859 0.81637 1.20184 1.20945 1.19715 1.45217 1.64037 1.13046 1.04485 1.25341 0.91200 0.95717 0.90051 1.67257 1.33212 1.36170 0.98182 1.21944 0.93913 0.85057 0.94602 1.20298 1.03976 0.98634 0.86930 1.23023 0.99423 1.00889 0.96341 1.23000 0.90916 1.02831 1.03007 1.77269 1.31688 1.21123 1.06465 1.85060 1.67171 1.10211 1.07202 0.94234 0.95908 0.89823 0.92108 0.75555 0.85553 0.87535 0.88292 0.88100 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.37 37.16 0.35 -2.93 16 2 C 0.26 5.97 2.46 -69.08 -0.17 5.80 16 3 H 0.06 1.42 7.39 -51.93 -0.38 1.03 16 4 C -0.54 -13.40 8.66 -34.44 -0.30 -13.70 16 5 H 0.07 1.63 7.74 -52.49 -0.41 1.22 16 6 C 0.07 1.83 5.17 -17.82 -0.09 1.74 16 7 N -0.88 -23.02 12.16 55.43 0.67 -22.35 16 8 Si 0.90 19.58 29.55 -169.99 -5.02 14.56 16 9 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 N -0.63 -13.01 5.21 -56.20 -0.29 -13.30 16 13 C 0.36 7.27 8.54 -86.36 -0.74 6.53 16 14 N -0.61 -12.09 10.61 -14.58 -0.15 -12.24 16 15 C 0.33 6.12 7.22 -159.04 -1.15 4.97 16 16 C -0.08 -1.05 6.28 -91.77 -0.58 -1.63 16 17 C -0.16 -1.84 10.05 -26.69 -0.27 -2.10 16 18 C -0.16 -1.84 10.24 -26.69 -0.27 -2.12 16 19 N -0.53 -10.13 11.31 29.54 0.33 -9.79 16 20 S 0.17 3.35 22.72 -107.50 -2.44 0.90 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.08 1.97 6.83 -51.93 -0.35 1.62 16 24 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 25 H 0.41 7.78 8.65 -40.82 -0.35 7.43 16 26 H 0.13 1.60 8.14 -51.93 -0.42 1.17 16 27 H 0.11 1.38 7.65 -51.93 -0.40 0.99 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 276.27 15.07 4.16 4.16 Total: -1.00 -26.68 276.27 -9.52 -36.20 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.57 Total: 5.29 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -3.22 Total: -3.43 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.56 Total: -57.68 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -2.44 Total: 0.90 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -26.68 -9.52 -36.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092640075.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.241 kcal (2) G-P(sol) polarization free energy of solvation -26.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds