Wall clock time and date at job start Sun Mar 29 2020 22:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47261 * 2 1 4 4 C 1.50704 * 109.47238 * 239.99895 * 2 1 3 5 5 H 1.07994 * 120.00560 * 245.46470 * 4 2 1 6 6 C 1.37881 * 119.99621 * 65.46431 * 4 2 1 7 7 N 1.31515 * 120.00192 * 9.55486 * 6 4 2 8 8 Si 1.86800 * 119.99915 * 189.56057 * 6 4 2 9 9 H 1.48508 * 109.47275 * 84.99137 * 8 6 4 10 10 H 1.48496 * 109.47295 * 204.99222 * 8 6 4 11 11 H 1.48497 * 109.46940 * 324.99531 * 8 6 4 12 12 N 1.46498 * 109.47103 * 120.00352 * 2 1 3 13 13 C 1.38313 * 119.99961 * 275.27649 * 12 2 1 14 14 N 1.31632 * 127.50695 * 179.43086 * 13 12 2 15 15 C 1.31290 * 116.79398 * 179.77919 * 14 13 12 16 16 C 1.50708 * 121.05969 * 180.25504 * 15 14 13 17 17 C 1.52997 * 117.49381 * 189.01683 * 16 15 14 18 18 C 1.53001 * 117.49361 * 120.35894 * 16 15 14 19 19 N 1.30119 * 117.87529 * 0.54585 * 15 14 13 20 20 S 1.69954 * 105.76528 * 359.71150 * 19 15 14 21 21 H 1.09000 * 109.47525 * 183.66070 * 1 2 3 22 22 H 1.08999 * 109.47096 * 303.67371 * 1 2 3 23 23 H 1.09007 * 109.47260 * 63.66125 * 1 2 3 24 24 H 0.97001 * 120.00176 * 179.97438 * 7 6 4 25 25 H 0.97003 * 120.00403 * 94.99324 * 12 2 1 26 26 H 1.08997 * 115.54940 * 334.69211 * 16 15 14 27 27 H 1.09000 * 117.50302 * 0.02562 * 17 16 15 28 28 H 1.09000 * 117.49778 * 145.02305 * 17 16 15 29 29 H 1.08995 * 117.49867 * 214.97483 * 18 16 15 30 30 H 1.09004 * 117.50137 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1339 6 6 1.7946 -0.1773 -2.4796 7 7 1.2993 1.0357 -2.5935 8 14 2.1759 -1.1780 -4.0102 9 1 1.0239 -2.0609 -4.3242 10 1 2.4227 -0.2613 -5.1521 11 1 3.3843 -2.0073 -3.7710 12 7 2.0183 -0.6907 1.1961 13 6 2.1449 -0.0022 2.3890 14 7 2.5553 -0.4743 3.5472 15 6 2.5989 0.3726 4.5495 16 6 3.0594 -0.0638 5.9166 17 6 2.8804 0.9243 7.0709 18 6 4.2776 0.6455 6.5113 19 7 2.2265 1.5992 4.3263 20 16 1.7929 1.6585 2.6841 21 1 -0.3634 -1.0255 0.0656 22 1 -0.3633 0.5698 0.8552 23 1 -0.3634 0.4560 -0.9210 24 1 1.1324 1.4109 -3.4723 25 1 2.2489 -1.6319 1.1526 26 1 2.9365 -1.1240 6.1378 27 1 2.4292 1.8897 6.8418 28 1 2.6401 0.5141 8.0518 29 1 4.9559 0.0520 7.1243 30 1 4.7463 1.4274 5.9137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092640075.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:53 Heat of formation + Delta-G solvation = 55.331379 kcal Electronic energy + Delta-G solvation = -14358.943977 eV Core-core repulsion = 11894.927412 eV Total energy + Delta-G solvation = -2464.016565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.21219 -38.48133 -37.27701 -34.79612 -32.51939 -30.54764 -27.45402 -26.81460 -23.55170 -23.21963 -22.82840 -20.61200 -19.70848 -18.68777 -17.56162 -16.94603 -16.73060 -16.31894 -15.63604 -15.21981 -14.65273 -14.25274 -13.67652 -13.41940 -12.96081 -12.75631 -12.64704 -12.53779 -12.46019 -12.30840 -12.20770 -12.04891 -11.48113 -11.39052 -11.22826 -10.64840 -10.58694 -10.27202 -8.99844 -8.28449 -6.41439 -0.17337 0.09117 0.89999 1.44952 1.46541 1.55039 1.67080 1.94261 2.40942 2.99909 3.05458 3.27415 3.89620 4.09524 4.22562 4.46380 4.55487 4.77062 4.79185 4.81931 4.90504 5.02196 5.15377 5.19656 5.30644 5.52313 5.55698 5.83314 5.91603 6.43918 6.64643 6.89295 7.28981 8.80079 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.056606 B = 0.005331 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.525678 B = 5250.969634 C = 5460.632592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.268 3.732 3 H 0.030 0.970 4 C -0.555 4.555 5 H 0.071 0.929 6 C 0.029 3.971 7 N -0.908 5.908 8 Si 0.966 3.034 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.269 1.269 12 N -0.634 5.634 13 C 0.349 3.651 14 N -0.615 5.615 15 C 0.329 3.671 16 C -0.102 4.102 17 C -0.143 4.143 18 C -0.145 4.145 19 N -0.535 5.535 20 S 0.153 5.847 21 H 0.048 0.952 22 H 0.031 0.969 23 H 0.063 0.937 24 H 0.270 0.730 25 H 0.414 0.586 26 H 0.142 0.858 27 H 0.089 0.911 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 -2.216 12.281 12.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.166 3.834 3 H 0.048 0.952 4 C -0.593 4.593 5 H 0.089 0.911 6 C -0.173 4.173 7 N -0.545 5.545 8 Si 0.791 3.209 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.268 5.268 13 C -0.030 4.030 14 N -0.353 5.353 15 C 0.040 3.960 16 C -0.125 4.125 17 C -0.181 4.181 18 C -0.183 4.183 19 N -0.369 5.369 20 S 0.287 5.713 21 H 0.067 0.933 22 H 0.050 0.950 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.252 0.748 26 H 0.160 0.840 27 H 0.107 0.893 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.724 -0.775 12.068 12.215 hybrid contribution 0.355 -1.493 -1.166 1.928 sum 2.079 -2.269 10.902 11.328 Atomic orbital electron populations 1.21999 0.97062 1.00279 1.00515 1.18963 0.91756 0.92734 0.79940 0.95219 1.21313 1.38150 1.09402 0.90467 0.91111 1.25614 0.94409 0.95440 1.01821 1.70043 1.44070 1.14907 1.25476 0.85440 0.78873 0.78413 0.78165 1.19585 1.21020 1.19307 1.44918 1.64633 1.13192 1.04076 1.25448 0.91453 0.95905 0.90242 1.67343 1.33139 1.36642 0.98202 1.22745 0.92724 0.84543 0.95954 1.20591 1.06521 1.00054 0.85374 1.23112 0.98984 0.99317 0.96685 1.23113 0.91006 1.01991 1.02237 1.77347 1.32371 1.21693 1.05532 1.85087 1.67557 1.10358 1.08312 0.93326 0.94975 0.91770 0.92072 0.74811 0.83999 0.89255 0.84953 0.84847 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.09 9.37 71.98 0.67 -5.42 16 2 C 0.27 12.41 2.46 44.25 0.11 12.52 16 3 H 0.03 1.55 7.39 -2.39 -0.02 1.53 16 4 C -0.56 -27.41 8.66 25.60 0.22 -27.19 16 5 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 6 C 0.03 1.47 5.17 84.66 0.44 1.91 16 7 N -0.91 -48.01 12.16 21.45 0.26 -47.75 16 8 Si 0.97 39.80 29.55 68.60 2.03 41.83 16 9 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 12 N -0.63 -25.95 5.21 -331.71 -1.73 -27.67 16 13 C 0.35 14.20 8.54 178.86 1.53 15.73 16 14 N -0.61 -23.94 10.61 -200.04 -2.12 -26.06 16 15 C 0.33 11.72 7.22 139.40 1.01 12.73 16 16 C -0.10 -2.63 6.28 -11.54 -0.07 -2.70 16 17 C -0.14 -2.90 10.05 30.62 0.31 -2.59 16 18 C -0.14 -2.95 10.24 30.62 0.31 -2.64 16 19 N -0.54 -20.20 11.31 -60.46 -0.68 -20.88 16 20 S 0.15 6.09 22.72 -56.49 -1.28 4.81 16 21 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.06 3.06 6.83 -2.38 -0.02 3.04 16 24 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 25 H 0.41 15.65 8.65 -92.71 -0.80 14.85 16 26 H 0.14 3.19 8.14 -2.39 -0.02 3.18 16 27 H 0.09 2.16 7.65 -2.39 -0.02 2.14 16 28 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -56.25 276.27 1.35 -54.90 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.36 Total: 18.48 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 4.52 Total: 2.34 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -4.27 Total: -122.36 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -1.28 Total: 4.81 kcal Total: -56.25 1.35 -54.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092640075.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.233 kcal (2) G-P(sol) polarization free energy of solvation -56.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds