Wall clock time and date at job start Sun Mar 29 2020 22:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46813 * 2 1 4 4 N 1.46494 * 109.47274 * 239.99973 * 2 1 3 5 5 C 1.36936 * 120.00148 * 54.74832 * 4 2 1 6 6 H 1.08001 * 119.99725 * 359.97438 * 5 4 2 7 7 C 1.38806 * 119.99988 * 180.02562 * 5 4 2 8 8 N 1.31625 * 120.00371 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99992 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47167 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47279 * 119.99591 * 9 7 5 12 12 H 1.48496 * 109.47193 * 239.99474 * 9 7 5 13 13 C 1.50700 * 109.46810 * 119.99704 * 2 1 3 14 14 C 1.38271 * 119.99409 * 95.90437 * 13 2 1 15 15 C 1.38217 * 120.02721 * 179.97438 * 14 13 2 16 16 C 1.38233 * 120.01237 * 0.04430 * 15 14 13 17 17 C 1.38327 * 119.98780 * 359.97438 * 16 15 14 18 18 Cl 1.73608 * 120.01174 * 180.02562 * 17 16 15 19 19 C 1.38190 * 119.99563 * 275.91748 * 13 2 1 20 20 H 1.08995 * 109.47235 * 299.99465 * 1 2 3 21 21 H 1.08999 * 109.47183 * 60.00805 * 1 2 3 22 22 H 1.09003 * 109.46642 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47177 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47302 * 299.99754 * 3 2 1 25 25 H 1.09004 * 109.46883 * 60.00092 * 3 2 1 26 26 H 0.97009 * 119.99841 * 234.74458 * 4 2 1 27 27 H 0.96998 * 119.99986 * 180.02562 * 8 7 5 28 28 H 1.08002 * 119.98386 * 0.02562 * 14 13 2 29 29 H 1.08001 * 119.99138 * 180.02562 * 15 14 13 30 30 H 1.08006 * 120.00504 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.00748 * 0.28338 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6013 -0.2888 -2.4370 6 1 0.9120 0.5370 -2.5338 7 6 2.0637 -0.9435 -3.5703 8 7 2.9033 -1.9502 -3.4523 9 14 1.4942 -0.3958 -5.2630 10 1 0.5589 0.7493 -5.1241 11 1 2.6693 0.0207 -6.0699 12 1 0.8023 -1.5215 -5.9407 13 6 2.0323 -0.7104 1.2305 14 6 2.3788 -2.0473 1.1638 15 6 2.8400 -2.6993 2.2919 16 6 2.9543 -2.0154 3.4877 17 6 2.6074 -0.6780 3.5552 18 17 2.7513 0.1817 5.0565 19 6 2.1462 -0.0256 2.4254 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 2.6373 -1.4325 -1.1091 27 1 3.2267 -2.4074 -4.2443 28 1 2.2898 -2.5820 0.2297 29 1 3.1109 -3.7435 2.2391 30 1 3.3143 -2.5251 4.3692 31 1 1.8710 1.0174 2.4786 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096491934.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:28 Heat of formation + Delta-G solvation = 24.741964 kcal Electronic energy + Delta-G solvation = -14838.521632 eV Core-core repulsion = 12338.842152 eV Total energy + Delta-G solvation = -2499.679479 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.47287 -36.71187 -35.77914 -32.58406 -30.64638 -29.77857 -28.50622 -26.50381 -24.34067 -22.46318 -22.03585 -19.02079 -17.52015 -16.49051 -15.39188 -14.98257 -14.47107 -13.90352 -13.68605 -13.50200 -13.23323 -12.77787 -12.51019 -11.88214 -11.57216 -11.49523 -11.18458 -11.13027 -10.98713 -10.89906 -10.62891 -10.57041 -10.32270 -9.86366 -9.56719 -8.99885 -8.61837 -8.36784 -7.01063 -5.79832 -3.08572 1.44753 1.53817 2.26088 3.41573 3.47500 3.49483 3.92279 4.56061 4.98666 5.05371 5.35516 5.48854 5.53642 5.64540 5.68825 5.78496 6.00885 6.09598 6.14827 6.28677 6.39590 6.53188 6.55456 6.60109 6.71791 6.93799 6.98138 7.11823 7.13296 7.70255 8.38508 9.50215 10.04656 10.40478 11.43240 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.044792 B = 0.006011 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.965286 B = 4656.865398 C = 5024.535213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.230 3.770 3 C -0.153 4.153 4 N -0.719 5.719 5 C -0.232 4.232 6 H 0.073 0.927 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.905 3.095 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.049 4.049 14 C -0.102 4.102 15 C -0.108 4.108 16 C -0.125 4.125 17 C -0.037 4.037 18 Cl -0.087 7.087 19 C -0.110 4.110 20 H 0.039 0.961 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.040 0.960 26 H 0.386 0.614 27 H 0.255 0.745 28 H 0.141 0.859 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 1.724 13.627 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.139 3.861 3 C -0.212 4.212 4 N -0.362 5.362 5 C -0.363 4.363 6 H 0.091 0.909 7 C -0.209 4.209 8 N -0.583 5.583 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.049 4.049 14 C -0.120 4.120 15 C -0.127 4.127 16 C -0.144 4.144 17 C -0.063 4.063 18 Cl -0.058 7.058 19 C -0.129 4.129 20 H 0.058 0.942 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.222 0.778 27 H 0.064 0.936 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.387 1.873 13.598 13.796 hybrid contribution 0.019 0.077 -0.843 0.847 sum -1.368 1.950 12.754 12.975 Atomic orbital electron populations 1.22188 0.96264 1.01501 1.00459 1.18503 0.92461 0.90847 0.84291 1.22352 1.01111 0.97411 1.00371 1.42623 1.54788 1.38748 1.00076 1.19201 1.21459 1.12328 0.83331 0.90887 1.24717 0.99962 0.98482 0.97754 1.69662 1.36065 1.24212 1.28312 0.86145 0.77759 0.77671 0.84782 1.20560 1.21932 1.21918 1.20220 0.96065 0.93970 0.94675 1.21392 0.96863 0.94589 0.99142 1.21116 0.99446 1.00028 0.92077 1.20934 1.02106 0.92558 0.98823 1.20825 1.05265 0.93127 0.87096 1.98337 1.96786 1.77471 1.33219 1.20943 1.00595 1.00488 0.90904 0.94176 0.91934 0.92937 0.93025 0.92109 0.94102 0.77830 0.93552 0.84130 0.85374 0.85636 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.34 37.16 0.31 -2.33 16 2 C 0.23 4.47 0.98 -132.97 -0.13 4.34 16 3 C -0.15 -2.78 7.97 37.16 0.30 -2.48 16 4 N -0.72 -17.22 4.85 -48.31 -0.23 -17.45 16 5 C -0.23 -6.15 8.70 -15.06 -0.13 -6.28 16 6 H 0.07 1.88 6.69 -52.49 -0.35 1.53 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 9 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 C -0.05 -0.85 4.80 -104.63 -0.50 -1.35 16 14 C -0.10 -1.74 9.01 -39.58 -0.36 -2.09 16 15 C -0.11 -1.55 10.05 -39.59 -0.40 -1.94 16 16 C -0.13 -1.69 9.83 -39.55 -0.39 -2.08 16 17 C -0.04 -0.53 6.32 -39.50 -0.25 -0.77 16 18 Cl -0.09 -1.10 28.96 -51.86 -1.50 -2.60 16 19 C -0.11 -1.70 8.93 -39.55 -0.35 -2.06 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.06 1.19 7.00 -51.93 -0.36 0.83 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 1.16 7.58 -51.93 -0.39 0.77 16 25 H 0.04 0.62 6.52 -51.93 -0.34 0.28 16 26 H 0.39 9.77 5.69 -40.82 -0.23 9.53 16 27 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.14 2.65 6.46 -52.49 -0.34 2.31 16 29 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 31 H 0.13 1.88 6.36 -52.49 -0.33 1.55 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -28.33 273.32 -7.52 -35.85 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -3.60 Total: 7.39 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -2.00 Total: -17.52 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.49 Total: -44.17 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.33 -7.52 -35.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096491934.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.590 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds