Wall clock time and date at job start Sun Mar 29 2020 22:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46813 * 2 1 4 4 N 1.46494 * 109.47274 * 239.99973 * 2 1 3 5 5 C 1.36936 * 120.00148 * 54.74832 * 4 2 1 6 6 H 1.08001 * 119.99725 * 359.97438 * 5 4 2 7 7 C 1.38806 * 119.99988 * 180.02562 * 5 4 2 8 8 N 1.31625 * 120.00371 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99992 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47167 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47279 * 119.99591 * 9 7 5 12 12 H 1.48496 * 109.47193 * 239.99474 * 9 7 5 13 13 C 1.50700 * 109.46810 * 119.99704 * 2 1 3 14 14 C 1.38271 * 119.99409 * 95.90437 * 13 2 1 15 15 C 1.38217 * 120.02721 * 179.97438 * 14 13 2 16 16 C 1.38233 * 120.01237 * 0.04430 * 15 14 13 17 17 C 1.38327 * 119.98780 * 359.97438 * 16 15 14 18 18 Cl 1.73608 * 120.01174 * 180.02562 * 17 16 15 19 19 C 1.38190 * 119.99563 * 275.91748 * 13 2 1 20 20 H 1.08995 * 109.47235 * 299.99465 * 1 2 3 21 21 H 1.08999 * 109.47183 * 60.00805 * 1 2 3 22 22 H 1.09003 * 109.46642 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47177 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47302 * 299.99754 * 3 2 1 25 25 H 1.09004 * 109.46883 * 60.00092 * 3 2 1 26 26 H 0.97009 * 119.99841 * 234.74458 * 4 2 1 27 27 H 0.96998 * 119.99986 * 180.02562 * 8 7 5 28 28 H 1.08002 * 119.98386 * 0.02562 * 14 13 2 29 29 H 1.08001 * 119.99138 * 180.02562 * 15 14 13 30 30 H 1.08006 * 120.00504 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.00748 * 0.28338 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6013 -0.2888 -2.4370 6 1 0.9120 0.5370 -2.5338 7 6 2.0637 -0.9435 -3.5703 8 7 2.9033 -1.9502 -3.4523 9 14 1.4942 -0.3958 -5.2630 10 1 0.5589 0.7493 -5.1241 11 1 2.6693 0.0207 -6.0699 12 1 0.8023 -1.5215 -5.9407 13 6 2.0323 -0.7104 1.2305 14 6 2.3788 -2.0473 1.1638 15 6 2.8400 -2.6993 2.2919 16 6 2.9543 -2.0154 3.4877 17 6 2.6074 -0.6780 3.5552 18 17 2.7513 0.1817 5.0565 19 6 2.1462 -0.0256 2.4254 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1300 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 2.6373 -1.4325 -1.1091 27 1 3.2267 -2.4074 -4.2443 28 1 2.2898 -2.5820 0.2297 29 1 3.1109 -3.7435 2.2391 30 1 3.3143 -2.5251 4.3692 31 1 1.8710 1.0174 2.4786 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096491934.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:28 Heat of formation + Delta-G solvation = 9.447586 kcal Electronic energy + Delta-G solvation = -14839.184846 eV Core-core repulsion = 12338.842152 eV Total energy + Delta-G solvation = -2500.342694 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.75059 -38.01558 -37.06892 -34.45782 -31.99411 -31.18680 -30.12878 -27.97762 -26.19436 -23.86062 -23.27700 -20.49766 -19.29377 -17.96863 -16.86065 -16.21805 -16.06869 -15.57344 -15.23106 -14.70313 -14.62349 -14.31586 -14.00298 -13.28681 -13.17462 -12.95133 -12.76143 -12.65946 -12.36876 -12.30771 -12.13487 -12.08158 -11.94108 -11.57733 -11.28595 -10.96083 -9.81229 -9.58890 -8.97551 -7.90406 -5.17673 0.24971 0.36238 1.16231 1.48603 1.49198 1.58375 2.58037 2.72435 3.44826 3.72229 3.80474 4.02144 4.19064 4.33935 4.38285 4.47675 4.56800 4.77564 4.87393 4.94822 5.05677 5.06957 5.14824 5.25480 5.39239 5.48254 5.54091 5.61291 5.76415 5.89232 6.32568 7.38988 8.12624 8.37243 9.33943 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.044792 B = 0.006011 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.965286 B = 4656.865398 C = 5024.535213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.221 3.779 3 C -0.146 4.146 4 N -0.731 5.731 5 C -0.220 4.220 6 H 0.079 0.921 7 C -0.078 4.078 8 N -0.972 5.972 9 Si 0.965 3.035 10 H -0.266 1.266 11 H -0.298 1.298 12 H -0.297 1.297 13 C -0.066 4.066 14 C -0.123 4.123 15 C -0.103 4.103 16 C -0.117 4.117 17 C -0.039 4.039 18 Cl -0.068 7.068 19 C -0.111 4.111 20 H 0.070 0.930 21 H 0.049 0.951 22 H 0.039 0.961 23 H 0.038 0.962 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.375 0.625 27 H 0.248 0.752 28 H 0.113 0.887 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 2.569 15.626 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.131 3.869 3 C -0.205 4.205 4 N -0.373 5.373 5 C -0.352 4.352 6 H 0.096 0.904 7 C -0.269 4.269 8 N -0.624 5.624 9 Si 0.795 3.205 10 H -0.190 1.190 11 H -0.225 1.225 12 H -0.224 1.224 13 C -0.066 4.066 14 C -0.142 4.142 15 C -0.121 4.121 16 C -0.135 4.135 17 C -0.065 4.065 18 Cl -0.039 7.039 19 C -0.130 4.130 20 H 0.089 0.911 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.209 0.791 27 H 0.057 0.943 28 H 0.131 0.869 29 H 0.170 0.830 30 H 0.173 0.827 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.830 2.759 15.634 15.980 hybrid contribution 0.143 -0.164 -1.285 1.303 sum -1.686 2.596 14.349 14.679 Atomic orbital electron populations 1.22097 0.95298 1.00981 1.01324 1.18750 0.93123 0.91317 0.83664 1.22253 1.00265 0.96589 1.01392 1.42838 1.54616 1.38867 1.00954 1.19534 1.19961 1.11295 0.84423 0.90360 1.25448 1.01104 0.99284 1.01109 1.69813 1.38087 1.25885 1.28587 0.85180 0.77152 0.77383 0.80742 1.19020 1.22532 1.22417 1.20038 0.97798 0.94178 0.94622 1.21285 0.98819 0.94847 0.99206 1.21336 0.98303 1.01136 0.91373 1.21266 1.00623 0.92321 0.99322 1.20948 1.04440 0.93593 0.87558 1.98349 1.96633 1.77126 1.31759 1.20985 1.00559 1.00959 0.90453 0.91069 0.93186 0.94160 0.94251 0.93467 0.90622 0.79069 0.94275 0.86924 0.83049 0.82691 0.83767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 8.34 71.98 0.60 -4.30 16 2 C 0.22 8.49 0.98 2.86 0.00 8.49 16 3 C -0.15 -5.13 7.97 71.98 0.57 -4.55 16 4 N -0.73 -35.72 4.85 -306.76 -1.49 -37.21 16 5 C -0.22 -11.80 8.70 84.03 0.73 -11.07 16 6 H 0.08 4.04 6.69 -2.91 -0.02 4.02 16 7 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 8 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 9 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 12 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 13 C -0.07 -2.24 4.80 -19.87 -0.10 -2.33 16 14 C -0.12 -4.21 9.01 22.27 0.20 -4.01 16 15 C -0.10 -2.77 10.05 22.26 0.22 -2.55 16 16 C -0.12 -2.79 9.83 22.29 0.22 -2.57 16 17 C -0.04 -1.00 6.32 22.32 0.14 -0.86 16 18 Cl -0.07 -1.48 28.96 -2.72 -0.08 -1.56 16 19 C -0.11 -3.16 8.93 22.29 0.20 -2.96 16 20 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 21 H 0.05 1.86 7.00 -2.39 -0.02 1.85 16 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.76 7.58 -2.39 -0.02 1.74 16 25 H 0.08 2.09 6.52 -2.38 -0.02 2.08 16 26 H 0.37 19.75 5.69 -92.70 -0.53 19.22 16 27 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.11 4.46 6.46 -2.91 -0.02 4.44 16 29 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.14 3.66 6.36 -2.91 -0.02 3.64 16 Total: -1.00 -61.09 273.32 4.62 -56.47 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.61 Total: 23.66 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 3.26 Total: -30.65 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -1.21 Total: -95.81 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -61.09 4.62 -56.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096491934.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.921 kcal (2) G-P(sol) polarization free energy of solvation -61.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds