Wall clock time and date at job start Sun Mar 29 2020 22:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46793 * 2 1 4 4 N 1.46500 * 109.46880 * 180.02562 * 3 2 1 5 5 C 1.36843 * 119.99982 * 269.99311 * 4 3 2 6 6 H 1.08004 * 119.99374 * 141.20385 * 5 4 3 7 7 C 1.38779 * 120.00073 * 321.20698 * 5 4 3 8 8 N 1.31600 * 120.00222 * 342.45869 * 7 5 4 9 9 Si 1.86802 * 119.99789 * 162.45276 * 7 5 4 10 10 H 1.48504 * 109.47429 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46930 * 120.00232 * 9 7 5 12 12 H 1.48496 * 109.47327 * 239.99859 * 9 7 5 13 13 C 1.39330 * 120.00032 * 90.00193 * 4 3 2 14 14 C 1.39081 * 120.07405 * 354.18657 * 13 4 3 15 15 C 1.38044 * 119.92137 * 179.77111 * 14 13 4 16 16 C 1.38445 * 120.07452 * 0.51123 * 15 14 13 17 17 Cl 1.73601 * 119.92094 * 179.72113 * 16 15 14 18 18 C 1.38437 * 120.15002 * 359.74499 * 16 15 14 19 19 C 1.38037 * 120.07964 * 359.97438 * 18 16 15 20 20 H 1.09002 * 109.47340 * 60.00254 * 1 2 3 21 21 H 1.09004 * 109.46641 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47444 * 300.00171 * 1 2 3 23 23 H 1.08994 * 109.46939 * 239.99877 * 2 1 3 24 24 H 1.08998 * 109.46866 * 119.99758 * 2 1 3 25 25 H 1.08996 * 109.47265 * 59.99720 * 3 2 1 26 26 H 1.09002 * 109.46971 * 299.99972 * 3 2 1 27 27 H 0.97001 * 119.99932 * 176.83481 * 8 7 5 28 28 H 1.07999 * 120.04235 * 0.02562 * 14 13 4 29 29 H 1.08003 * 119.96516 * 180.23562 * 15 14 13 30 30 H 1.08004 * 119.95611 * 179.97438 * 18 16 15 31 31 H 1.08001 * 120.03682 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1897 1.4426 1.1842 6 1 5.0910 0.8565 1.2869 7 6 3.7258 2.1955 2.2537 8 7 2.8546 3.1606 2.0503 9 14 4.3380 1.8388 3.9822 10 1 5.3059 0.7133 3.9422 11 1 5.0064 3.0466 4.5296 12 1 3.1888 1.4735 4.8488 13 6 4.2011 1.4428 -1.2075 14 6 3.5121 1.3211 -2.4096 15 6 4.2046 1.3265 -3.6037 16 6 5.5842 1.4421 -3.6052 17 17 6.4516 1.4412 -5.1090 18 6 6.2735 1.5581 -2.4103 19 6 5.5869 1.5593 -1.2128 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6766 1.9563 -0.8900 27 1 2.4957 3.6565 2.8027 28 1 2.4363 1.2267 -2.4089 29 1 3.6699 1.2358 -4.5378 30 1 7.3498 1.6478 -2.4151 31 1 6.1254 1.6494 -0.2810 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111271869.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:34 Heat of formation + Delta-G solvation = 12.407048 kcal Electronic energy + Delta-G solvation = -14824.843809 eV Core-core repulsion = 12324.629448 eV Total energy + Delta-G solvation = -2500.214362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.72081 -36.38993 -35.25078 -32.97405 -31.79277 -30.09901 -28.10288 -26.19683 -23.87981 -21.77372 -21.06382 -20.00411 -17.40795 -16.72112 -15.24235 -14.88700 -14.44989 -14.15842 -13.34990 -13.29566 -13.24982 -12.57009 -12.53334 -11.99151 -11.73812 -11.38494 -11.19618 -11.06352 -10.91192 -10.75202 -10.52692 -10.38618 -10.36916 -9.97786 -9.72286 -9.23941 -8.44036 -8.14354 -6.72847 -6.22851 -4.03773 2.30424 2.38121 3.08162 3.09315 3.15492 3.19162 3.99836 4.59026 4.80536 4.97546 5.61006 5.68049 5.70899 5.74169 5.91715 6.17860 6.29014 6.37181 6.44841 6.48215 6.56650 6.61991 6.86918 6.89064 7.12962 7.23596 7.26101 7.36592 7.40451 7.71373 8.06133 8.57916 9.17323 9.56381 10.53379 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.025372 B = 0.007370 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.312221 B = 3798.356402 C = 4658.790914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.110 3.890 4 N -0.437 5.437 5 C -0.312 4.312 6 H 0.089 0.911 7 C 0.036 3.964 8 N -0.862 5.862 9 Si 0.917 3.083 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.222 3.778 14 C -0.228 4.228 15 C -0.055 4.055 16 C -0.148 4.148 17 Cl -0.121 7.121 18 C -0.058 4.058 19 C -0.196 4.196 20 H 0.049 0.951 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.110 0.890 26 H 0.049 0.951 27 H 0.269 0.731 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 -3.479 -4.334 5.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C -0.014 4.014 4 N -0.122 5.122 5 C -0.440 4.440 6 H 0.106 0.894 7 C -0.169 4.169 8 N -0.498 5.498 9 Si 0.743 3.257 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.205 1.205 13 C 0.106 3.894 14 C -0.252 4.252 15 C -0.075 4.075 16 C -0.178 4.178 17 Cl -0.093 7.093 18 C -0.078 4.078 19 C -0.220 4.220 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.128 0.872 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.887 -3.287 -4.028 5.274 hybrid contribution 0.265 -0.066 0.716 0.767 sum -0.622 -3.353 -3.312 4.753 Atomic orbital electron populations 1.21676 0.96495 1.00646 1.01441 1.21934 0.94673 0.99406 1.01746 1.21633 0.81396 0.94617 1.03769 1.42537 1.03495 1.64435 1.01687 1.19436 1.10963 1.25630 0.88017 0.89387 1.25441 0.97510 0.93385 1.00607 1.69975 1.30111 1.17762 1.31903 0.86013 0.78921 0.78645 0.82073 1.19123 1.20589 1.20471 1.18315 0.91755 0.92760 0.86614 1.20379 0.98921 1.15011 0.90892 1.20424 0.91751 0.98019 0.97292 1.20131 0.91879 1.20853 0.84915 1.98250 1.77793 1.98037 1.35173 1.20537 0.98584 0.98023 0.90692 1.20490 0.92939 1.11347 0.97230 0.93202 0.93465 0.92883 0.92908 0.91943 0.87237 0.93260 0.92070 0.86693 0.87128 0.87018 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.91 37.16 0.37 -1.81 16 2 C -0.14 -2.55 6.21 -26.73 -0.17 -2.71 16 3 C 0.11 2.36 4.62 -4.04 -0.02 2.34 16 4 N -0.44 -10.33 2.63 -113.13 -0.30 -10.62 16 5 C -0.31 -7.76 8.32 -15.12 -0.13 -7.89 16 6 H 0.09 2.17 7.11 -52.48 -0.37 1.80 16 7 C 0.04 0.88 5.04 -17.45 -0.09 0.80 16 8 N -0.86 -22.16 11.31 55.49 0.63 -21.53 16 9 Si 0.92 19.21 29.59 -169.99 -5.03 14.18 16 10 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.22 5.00 6.50 -83.83 -0.55 4.46 16 14 C -0.23 -4.62 9.07 -39.34 -0.36 -4.97 16 15 C -0.06 -1.03 9.82 -39.58 -0.39 -1.42 16 16 C -0.15 -2.80 6.32 -39.43 -0.25 -3.05 16 17 Cl -0.12 -2.01 28.95 -51.86 -1.50 -3.51 16 18 C -0.06 -1.13 9.82 -39.58 -0.39 -1.52 16 19 C -0.20 -4.24 9.25 -39.35 -0.36 -4.60 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.96 7.95 -51.93 -0.41 0.54 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.11 2.60 5.45 -51.93 -0.28 2.31 16 26 H 0.05 1.02 6.45 -51.93 -0.33 0.69 16 27 H 0.27 6.53 8.32 -40.82 -0.34 6.19 16 28 H 0.12 2.18 6.16 -52.49 -0.32 1.86 16 29 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 30 H 0.11 1.93 8.06 -52.48 -0.42 1.50 16 31 H 0.13 2.74 6.62 -52.49 -0.35 2.39 16 LS Contribution 275.43 15.07 4.15 4.15 Total: -1.00 -25.31 275.43 -8.12 -33.42 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -3.75 Total: 4.29 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.32 Total: -20.38 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.33 Total: -32.16 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -1.50 Total: -3.51 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -25.31 -8.12 -33.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111271869.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.832 kcal (2) G-P(sol) polarization free energy of solvation -25.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds