Wall clock time and date at job start Sun Mar 29 2020 22:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46810 * 2 1 4 4 H 1.09004 * 109.47142 * 55.00674 * 3 2 1 5 5 N 1.46495 * 109.47580 * 294.99816 * 3 2 1 6 6 C 1.36942 * 119.99445 * 85.00159 * 5 3 2 7 7 H 1.07994 * 120.00324 * 0.02562 * 6 5 3 8 8 C 1.38812 * 119.99731 * 180.02562 * 6 5 3 9 9 N 1.31621 * 120.00045 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00142 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47083 * 89.99847 * 10 8 6 12 12 H 1.48509 * 109.47056 * 209.99820 * 10 8 6 13 13 H 1.48499 * 109.47136 * 329.99638 * 10 8 6 14 14 C 1.50706 * 109.47076 * 174.99976 * 3 2 1 15 15 C 1.38244 * 119.98773 * 260.00301 * 14 3 2 16 16 C 1.38217 * 120.01084 * 180.02562 * 15 14 3 17 17 C 1.38351 * 119.98541 * 0.25893 * 16 15 14 18 18 Cl 1.73604 * 120.00786 * 179.69323 * 17 16 15 19 19 C 1.38348 * 119.97455 * 359.46866 * 17 16 15 20 20 C 1.38212 * 119.98576 * 0.54994 * 19 17 16 21 21 H 1.09008 * 109.47324 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47115 * 299.99642 * 1 2 3 23 23 H 1.09001 * 109.47415 * 59.99948 * 1 2 3 24 24 H 1.08999 * 109.47115 * 240.00358 * 2 1 3 25 25 H 1.08993 * 109.47316 * 120.00379 * 2 1 3 26 26 H 0.97000 * 120.00810 * 265.00061 * 5 3 2 27 27 H 0.97003 * 119.99784 * 180.02562 * 9 8 6 28 28 H 1.07999 * 119.99331 * 0.02562 * 15 14 3 29 29 H 1.08002 * 120.00169 * 179.97438 * 16 15 14 30 30 H 1.08007 * 120.00586 * 180.25470 * 19 17 16 31 31 H 1.08000 * 119.99226 * 179.72624 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6524 2.0975 -1.2517 6 6 0.4155 2.6735 -1.3686 7 1 -0.2741 2.6453 -0.5380 8 6 0.0480 3.2937 -2.5549 9 7 -1.1410 3.8469 -2.6675 10 14 1.2405 3.3421 -3.9920 11 1 1.0365 2.1437 -4.8449 12 1 0.9989 4.5680 -4.7947 13 1 2.6339 3.3531 -3.4788 14 6 3.5418 1.4444 0.1238 15 6 4.1338 1.6873 1.3493 16 6 5.5112 1.6896 1.4633 17 6 6.2976 1.4542 0.3497 18 17 8.0279 1.4649 0.4906 19 6 5.7046 1.2056 -0.8753 20 6 4.3270 1.2039 -0.9881 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.2718 2.1233 -1.9978 27 1 -1.3978 4.2800 -3.4966 28 1 3.5198 1.8752 2.2177 29 1 5.9736 1.8798 2.4207 30 1 6.3179 1.0176 -1.7442 31 1 3.8640 1.0142 -1.9452 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120266633.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:16 Heat of formation + Delta-G solvation = 20.611019 kcal Electronic energy + Delta-G solvation = -14681.035074 eV Core-core repulsion = 12181.176464 eV Total energy + Delta-G solvation = -2499.858611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.43472 -36.77003 -35.75153 -32.46471 -31.00577 -30.62349 -30.00942 -25.80116 -23.10244 -22.33058 -21.81611 -19.84586 -17.97467 -16.79314 -15.56338 -15.16052 -14.43234 -14.17457 -13.74104 -13.57641 -13.40482 -13.16004 -12.61566 -12.16129 -12.03701 -11.66742 -11.28948 -11.13555 -10.98909 -10.75488 -10.63578 -10.41803 -10.31335 -10.02243 -9.49295 -9.01167 -8.92242 -8.38153 -7.33496 -5.81152 -3.16394 1.28714 1.41172 2.16568 3.34119 3.36494 3.42775 3.77124 4.55202 4.86551 4.96383 5.05437 5.27754 5.46937 5.48303 5.59607 5.73156 5.89378 5.92172 6.01602 6.14112 6.31063 6.33138 6.45944 6.54441 6.61614 6.72573 6.93258 6.99608 7.28738 7.94211 8.37114 9.14651 9.87197 10.06332 11.36576 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.028044 B = 0.006813 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.190775 B = 4108.765277 C = 4761.255265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.214 3.786 4 H 0.067 0.933 5 N -0.744 5.744 6 C -0.240 4.240 7 H 0.096 0.904 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.877 3.123 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C -0.062 4.062 15 C -0.104 4.104 16 C -0.111 4.111 17 C -0.046 4.046 18 Cl -0.085 7.085 19 C -0.110 4.110 20 C -0.100 4.100 21 H 0.033 0.967 22 H 0.043 0.957 23 H 0.088 0.912 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.361 0.639 27 H 0.260 0.740 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.549 -6.790 6.777 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C 0.105 3.895 4 H 0.085 0.915 5 N -0.388 5.388 6 C -0.370 4.370 7 H 0.113 0.887 8 C -0.189 4.189 9 N -0.579 5.579 10 Si 0.708 3.292 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.203 1.203 14 C -0.063 4.063 15 C -0.123 4.123 16 C -0.129 4.129 17 C -0.073 4.073 18 Cl -0.057 7.057 19 C -0.129 4.129 20 C -0.119 4.119 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.107 0.893 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.195 0.805 27 H 0.070 0.930 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.446 -6.677 6.817 16.488 hybrid contribution 0.992 0.140 -1.159 1.532 sum 14.437 -6.537 5.658 16.828 Atomic orbital electron populations 1.21812 0.95175 0.99752 1.03880 1.22100 0.97166 0.97649 1.00059 1.19283 0.86389 0.92775 0.91083 0.91532 1.42865 1.16743 1.67870 1.11281 1.19061 0.90225 1.27810 0.99883 0.88676 1.24644 0.96439 1.00222 0.97627 1.69689 1.19323 1.42120 1.26728 0.86656 0.81275 0.77485 0.83828 1.21025 1.21689 1.20270 1.20606 0.97641 0.95220 0.92859 1.21021 0.93602 0.99926 0.97759 1.20972 0.93547 1.00925 0.97483 1.20835 0.83739 1.06908 0.95779 1.98342 1.11759 1.97248 1.98334 1.21009 0.95091 1.00705 0.96061 1.21000 0.92329 0.99247 0.99285 0.94807 0.93809 0.89272 0.92745 0.93632 0.80468 0.93016 0.85040 0.85314 0.85350 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.18 37.15 0.34 -2.33 16 2 C -0.13 -2.17 5.59 -26.73 -0.15 -2.32 16 3 C 0.21 3.92 2.64 -69.08 -0.18 3.73 16 4 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 5 N -0.74 -16.63 4.82 -54.55 -0.26 -16.90 16 6 C -0.24 -6.37 8.23 -15.06 -0.12 -6.49 16 7 H 0.10 2.68 7.55 -52.49 -0.40 2.29 16 8 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 9 N -0.93 -28.39 13.97 55.49 0.78 -27.61 16 10 Si 0.88 21.54 27.74 -169.99 -4.71 16.83 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 14 C -0.06 -1.00 4.96 -104.62 -0.52 -1.52 16 15 C -0.10 -1.44 9.67 -39.59 -0.38 -1.83 16 16 C -0.11 -1.41 9.83 -39.55 -0.39 -1.80 16 17 C -0.05 -0.62 6.32 -39.50 -0.25 -0.87 16 18 Cl -0.09 -1.02 28.96 -51.86 -1.50 -2.52 16 19 C -0.11 -1.53 9.83 -39.55 -0.39 -1.91 16 20 C -0.10 -1.56 9.05 -39.59 -0.36 -1.92 16 21 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.09 1.92 5.99 -51.93 -0.31 1.61 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.36 8.01 3.92 -40.82 -0.16 7.85 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.13 1.56 8.04 -52.49 -0.42 1.14 16 29 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 31 H 0.13 2.04 6.91 -52.49 -0.36 1.68 16 LS Contribution 274.36 15.07 4.13 4.13 Total: -1.00 -28.94 274.36 -7.84 -36.78 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -3.77 Total: 6.45 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -2.50 Total: -17.16 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.51 Total: -44.51 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.83 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.94 -7.84 -36.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120266633.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.392 kcal (2) G-P(sol) polarization free energy of solvation -28.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds