Wall clock time and date at job start Sun Mar 29 2020 22:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46810 * 2 1 4 4 H 1.09004 * 109.47142 * 55.00674 * 3 2 1 5 5 N 1.46495 * 109.47580 * 294.99816 * 3 2 1 6 6 C 1.36942 * 119.99445 * 85.00159 * 5 3 2 7 7 H 1.07994 * 120.00324 * 0.02562 * 6 5 3 8 8 C 1.38812 * 119.99731 * 180.02562 * 6 5 3 9 9 N 1.31621 * 120.00045 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00142 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47083 * 89.99847 * 10 8 6 12 12 H 1.48509 * 109.47056 * 209.99820 * 10 8 6 13 13 H 1.48499 * 109.47136 * 329.99638 * 10 8 6 14 14 C 1.50706 * 109.47076 * 174.99976 * 3 2 1 15 15 C 1.38244 * 119.98773 * 260.00301 * 14 3 2 16 16 C 1.38217 * 120.01084 * 180.02562 * 15 14 3 17 17 C 1.38351 * 119.98541 * 0.25893 * 16 15 14 18 18 Cl 1.73604 * 120.00786 * 179.69323 * 17 16 15 19 19 C 1.38348 * 119.97455 * 359.46866 * 17 16 15 20 20 C 1.38212 * 119.98576 * 0.54994 * 19 17 16 21 21 H 1.09008 * 109.47324 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47115 * 299.99642 * 1 2 3 23 23 H 1.09001 * 109.47415 * 59.99948 * 1 2 3 24 24 H 1.08999 * 109.47115 * 240.00358 * 2 1 3 25 25 H 1.08993 * 109.47316 * 120.00379 * 2 1 3 26 26 H 0.97000 * 120.00810 * 265.00061 * 5 3 2 27 27 H 0.97003 * 119.99784 * 180.02562 * 9 8 6 28 28 H 1.07999 * 119.99331 * 0.02562 * 15 14 3 29 29 H 1.08002 * 120.00169 * 179.97438 * 16 15 14 30 30 H 1.08007 * 120.00586 * 180.25470 * 19 17 16 31 31 H 1.08000 * 119.99226 * 179.72624 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6524 2.0975 -1.2517 6 6 0.4155 2.6735 -1.3686 7 1 -0.2741 2.6453 -0.5380 8 6 0.0480 3.2937 -2.5549 9 7 -1.1410 3.8469 -2.6675 10 14 1.2405 3.3421 -3.9920 11 1 1.0365 2.1437 -4.8449 12 1 0.9989 4.5680 -4.7947 13 1 2.6339 3.3531 -3.4788 14 6 3.5418 1.4444 0.1238 15 6 4.1338 1.6873 1.3493 16 6 5.5112 1.6896 1.4633 17 6 6.2976 1.4542 0.3497 18 17 8.0279 1.4649 0.4906 19 6 5.7046 1.2056 -0.8753 20 6 4.3270 1.2039 -0.9881 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.2718 2.1233 -1.9978 27 1 -1.3978 4.2800 -3.4966 28 1 3.5198 1.8752 2.2177 29 1 5.9736 1.8798 2.4207 30 1 6.3179 1.0176 -1.7442 31 1 3.8640 1.0142 -1.9452 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120266633.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:16 Heat of formation + Delta-G solvation = 4.545544 kcal Electronic energy + Delta-G solvation = -14681.731726 eV Core-core repulsion = 12181.176464 eV Total energy + Delta-G solvation = -2500.555262 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.59343 -38.00163 -37.04755 -34.36632 -32.27960 -31.93631 -31.57890 -27.33389 -24.69982 -23.70335 -23.03251 -21.31826 -19.78474 -18.02563 -17.01672 -16.41334 -16.10111 -15.59677 -15.18100 -14.96018 -14.59491 -14.42313 -14.32761 -13.61340 -13.35987 -13.20361 -12.92614 -12.51030 -12.40231 -12.17633 -12.10607 -11.83585 -11.75930 -11.58959 -11.41208 -10.96701 -9.98370 -9.54398 -9.26792 -7.97131 -5.28870 0.17965 0.34903 1.15700 1.37637 1.39633 1.46546 2.50786 2.66556 3.34801 3.60434 3.82666 3.86954 3.97542 4.36037 4.38598 4.48072 4.50031 4.68805 4.79269 4.89041 5.04027 5.12061 5.20021 5.25778 5.29683 5.42390 5.66896 5.71804 5.84122 5.86147 6.26362 7.11852 7.86966 8.05525 9.23995 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.028044 B = 0.006813 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.190775 B = 4108.765277 C = 4761.255265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.211 3.789 4 H 0.059 0.941 5 N -0.748 5.748 6 C -0.209 4.209 7 H 0.068 0.932 8 C -0.064 4.064 9 N -0.984 5.984 10 Si 0.939 3.061 11 H -0.280 1.280 12 H -0.301 1.301 13 H -0.254 1.254 14 C -0.080 4.080 15 C -0.103 4.103 16 C -0.105 4.105 17 C -0.049 4.049 18 Cl -0.071 7.071 19 C -0.112 4.112 20 C -0.114 4.114 21 H 0.055 0.945 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.364 0.636 27 H 0.255 0.745 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.249 -7.793 7.697 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.103 3.897 4 H 0.077 0.923 5 N -0.392 5.392 6 C -0.340 4.340 7 H 0.086 0.914 8 C -0.255 4.255 9 N -0.635 5.635 10 Si 0.767 3.233 11 H -0.206 1.206 12 H -0.228 1.228 13 H -0.179 1.179 14 C -0.081 4.081 15 C -0.122 4.122 16 C -0.124 4.124 17 C -0.076 4.076 18 Cl -0.042 7.042 19 C -0.130 4.130 20 C -0.132 4.132 21 H 0.074 0.926 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.198 0.802 27 H 0.064 0.936 28 H 0.167 0.833 29 H 0.173 0.827 30 H 0.163 0.837 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.204 -7.720 7.775 19.560 hybrid contribution 0.223 0.380 -1.289 1.362 sum 16.426 -7.340 6.486 19.125 Atomic orbital electron populations 1.21727 0.96308 1.00533 1.01684 1.21988 0.95950 0.96745 1.01454 1.19407 0.88480 0.93009 0.88782 0.92295 1.42895 1.15257 1.67852 1.13154 1.19004 0.91061 1.25452 0.98456 0.91380 1.25343 0.98156 1.01389 1.00612 1.69858 1.21675 1.44664 1.27300 0.85638 0.80259 0.76887 0.80471 1.20620 1.22779 1.17909 1.20391 0.95892 0.97575 0.94239 1.21211 0.94385 0.99092 0.97473 1.21252 0.93053 0.99625 0.98464 1.21012 0.84691 1.06055 0.95795 1.98353 1.10452 1.97121 1.98285 1.21160 0.94548 1.00254 0.97050 1.21001 0.93172 1.00154 0.98892 0.92585 0.93820 0.93524 0.92794 0.90637 0.80194 0.93641 0.83266 0.82742 0.83746 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 9.18 71.98 0.66 -4.47 16 2 C -0.12 -3.88 5.59 30.59 0.17 -3.71 16 3 C 0.21 7.48 2.64 44.25 0.12 7.59 16 4 H 0.06 2.17 7.94 -2.38 -0.02 2.15 16 5 N -0.75 -33.11 4.82 -326.50 -1.57 -34.69 16 6 C -0.21 -11.28 8.23 84.03 0.69 -10.59 16 7 H 0.07 3.99 7.55 -2.91 -0.02 3.97 16 8 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 9 N -0.98 -62.13 13.97 21.65 0.30 -61.82 16 10 Si 0.94 44.97 27.74 68.60 1.90 46.88 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 13 H -0.25 -11.07 6.52 99.48 0.65 -10.42 16 14 C -0.08 -2.40 4.96 -19.86 -0.10 -2.50 16 15 C -0.10 -2.54 9.67 22.27 0.22 -2.33 16 16 C -0.11 -2.32 9.83 22.29 0.22 -2.10 16 17 C -0.05 -1.15 6.32 22.32 0.14 -1.01 16 18 Cl -0.07 -1.46 28.96 -2.72 -0.08 -1.54 16 19 C -0.11 -2.79 9.83 22.29 0.22 -2.57 16 20 C -0.11 -3.30 9.05 22.26 0.20 -3.10 16 21 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 22 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.05 2.04 5.99 -2.39 -0.01 2.03 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.36 15.73 3.92 -92.71 -0.36 15.37 16 27 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.15 3.07 8.04 -2.91 -0.02 3.05 16 29 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.12 3.66 6.91 -2.91 -0.02 3.64 16 Total: -1.00 -62.98 274.36 4.26 -58.72 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.70 Total: 20.45 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 3.00 Total: -27.99 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -1.27 Total: -96.51 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.88 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -62.98 4.26 -58.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120266633.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.265 kcal (2) G-P(sol) polarization free energy of solvation -62.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds