Wall clock time and date at job start Sun Mar 29 2020 22:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38675 * 120.41772 * 2 1 4 4 C 1.38630 * 118.41860 * 179.74920 * 3 2 1 5 5 C 1.38224 * 119.16347 * 0.25530 * 4 3 2 6 6 S 1.76200 * 119.61901 * 180.02562 * 5 4 3 7 7 O 1.42105 * 102.99729 * 203.85186 * 6 5 4 8 8 C 1.81394 * 103.00100 * 89.99962 * 6 5 4 9 9 C 1.53006 * 109.46999 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.46952 * 179.97438 * 9 8 6 11 11 H 1.08005 * 120.00092 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99881 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00127 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00062 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47151 * 89.99628 * 14 12 10 16 16 H 1.48497 * 109.47399 * 209.99444 * 14 12 10 17 17 H 1.48502 * 109.47172 * 329.99686 * 14 12 10 18 18 N 1.31856 * 120.76155 * 359.97390 * 5 4 3 19 19 C 1.31888 * 121.72786 * 0.02789 * 18 5 4 20 20 H 1.09003 * 109.46968 * 89.99785 * 1 2 3 21 21 H 1.09002 * 109.46977 * 209.99446 * 1 2 3 22 22 H 1.08994 * 109.47024 * 329.99906 * 1 2 3 23 23 H 1.08002 * 120.79244 * 0.03059 * 3 2 1 24 24 H 1.07997 * 120.41760 * 180.23193 * 4 3 2 25 25 H 1.09000 * 109.47200 * 299.99759 * 8 6 5 26 26 H 1.08995 * 109.47497 * 60.00023 * 8 6 5 27 27 H 1.08995 * 109.47072 * 299.99422 * 9 8 6 28 28 H 1.08991 * 109.47144 * 60.00173 * 9 8 6 29 29 H 0.96998 * 120.00460 * 179.97438 * 13 12 10 30 30 H 1.07999 * 119.61439 * 180.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0053 5 6 4.2256 -0.0822 0.0051 6 16 5.9860 -0.1577 0.0125 7 8 6.2535 -1.4353 -0.5494 8 6 6.3860 -0.1795 1.7816 9 6 7.9042 -0.2444 1.9604 10 6 8.2366 -0.2618 3.4303 11 1 7.4443 -0.2303 4.1635 12 6 9.5522 -0.3192 3.8389 13 7 9.8423 -0.3339 5.1215 14 14 10.9225 -0.3745 2.5707 15 1 11.3455 1.0097 2.2382 16 1 12.0782 -1.1259 3.1230 17 1 10.4334 -1.0511 1.3426 18 7 3.5255 -1.1995 0.0003 19 6 2.2066 -1.1916 -0.0048 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8901 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 1.6890 2.1424 0.0005 24 1 4.1735 2.0592 0.0093 25 1 6.0036 0.7265 2.2518 26 1 5.9274 -1.0518 2.2472 27 1 8.2870 -1.1501 1.4903 28 1 8.3625 0.6282 1.4951 29 1 10.7678 -0.3746 5.4091 30 1 1.6673 -2.1273 -0.0082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123426453.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:30 Heat of formation + Delta-G solvation = -44.852269 kcal Electronic energy + Delta-G solvation = -14129.740166 eV Core-core repulsion = 11629.086561 eV Total energy + Delta-G solvation = -2500.653606 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.07399 -36.83385 -35.72094 -34.58723 -33.26688 -32.93426 -28.40706 -27.53356 -24.73775 -23.43288 -22.66029 -19.31874 -19.14681 -17.64495 -17.48461 -16.37457 -16.04193 -16.01867 -15.64439 -15.17287 -15.08413 -14.65979 -14.16267 -13.74190 -13.67504 -13.38200 -13.34086 -12.90620 -12.70491 -12.43683 -12.06386 -11.77857 -11.59096 -11.26442 -10.78510 -10.77737 -10.37543 -10.11855 -9.41657 -8.31693 -6.37555 -0.26805 0.30665 0.90317 1.35772 1.40461 1.51889 1.71486 2.35961 2.63612 2.92669 3.03157 3.65907 3.86786 3.99325 4.07549 4.22005 4.29110 4.34691 4.66382 4.79027 4.79598 4.84414 4.95010 5.14652 5.26463 5.29008 5.31330 5.57699 5.70642 6.24006 6.68794 6.85926 7.26913 8.85057 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.046885 B = 0.005284 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.059277 B = 5297.600536 C = 5539.956868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.105 4.105 3 C -0.093 4.093 4 C -0.090 4.090 5 C -0.272 4.272 6 S 1.407 4.593 7 O -0.907 6.907 8 C -0.423 4.423 9 C 0.000 4.000 10 C -0.533 4.533 11 H 0.030 0.970 12 C 0.006 3.994 13 N -0.950 5.950 14 Si 0.943 3.057 15 H -0.241 1.241 16 H -0.285 1.285 17 H -0.255 1.255 18 N -0.480 5.480 19 C 0.050 3.950 20 H 0.091 0.909 21 H 0.074 0.926 22 H 0.091 0.909 23 H 0.184 0.816 24 H 0.198 0.802 25 H 0.134 0.866 26 H 0.044 0.956 27 H 0.002 0.998 28 H 0.062 0.938 29 H 0.268 0.732 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.371 10.245 -14.298 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.120 4.120 4 C -0.111 4.111 5 C -0.503 4.503 6 S 1.605 4.395 7 O -0.902 6.902 8 C -0.561 4.561 9 C -0.038 4.038 10 C -0.572 4.572 11 H 0.048 0.952 12 C -0.192 4.192 13 N -0.590 5.590 14 Si 0.765 3.235 15 H -0.164 1.164 16 H -0.211 1.211 17 H -0.179 1.179 18 N -0.189 5.189 19 C -0.111 4.111 20 H 0.109 0.891 21 H 0.093 0.907 22 H 0.110 0.890 23 H 0.201 0.799 24 H 0.215 0.785 25 H 0.152 0.848 26 H 0.063 0.937 27 H 0.021 0.979 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.169 9.394 -14.973 23.955 hybrid contribution -0.723 -1.759 1.410 2.367 sum -16.892 7.635 -13.563 22.969 Atomic orbital electron populations 1.20880 0.87290 1.04579 1.04003 1.21544 0.99598 0.93777 0.95765 1.22173 0.94011 0.99592 0.96219 1.22507 0.96387 0.98279 0.93941 1.30286 1.18771 0.93555 1.07705 1.68529 0.79469 1.05881 0.85645 1.92961 1.80201 1.46354 1.70693 1.27598 1.02816 1.06619 1.19047 1.19220 0.91063 0.97534 0.96020 1.21373 0.92772 1.50998 0.92042 0.95173 1.26040 1.01796 0.93803 0.97515 1.70058 1.20012 1.52208 1.16768 0.85759 0.77822 0.80467 0.79412 1.16419 1.21091 1.17924 1.67958 1.10029 1.32055 1.08855 1.23258 0.89902 0.99597 0.98388 0.89090 0.90712 0.88981 0.79866 0.78458 0.84803 0.93711 0.97925 0.91953 0.92297 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.04 71.24 0.71 -0.41 16 2 C -0.10 -1.95 5.90 -19.77 -0.12 -2.06 16 3 C -0.09 -1.44 9.86 22.47 0.22 -1.22 16 4 C -0.09 -1.68 9.80 22.36 0.22 -1.46 16 5 C -0.27 -8.12 6.48 84.69 0.55 -7.57 16 6 S 1.41 44.83 13.58 -56.49 -0.77 44.06 16 7 O -0.91 -42.18 17.59 -148.98 -2.62 -44.80 16 8 C -0.42 -16.96 5.82 71.98 0.42 -16.54 16 9 C 0.00 0.01 4.05 29.85 0.12 0.13 16 10 C -0.53 -31.66 9.66 25.60 0.25 -31.42 16 11 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 12 C 0.01 0.33 5.47 84.65 0.46 0.80 16 13 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 14 Si 0.94 44.27 27.47 68.60 1.88 46.16 16 15 H -0.24 -10.06 7.11 99.48 0.71 -9.36 16 16 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 17 H -0.26 -11.61 6.54 99.48 0.65 -10.96 16 18 N -0.48 -17.23 9.96 -193.32 -1.93 -19.15 16 19 C 0.05 1.35 10.86 84.67 0.92 2.27 16 20 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 21 H 0.07 0.74 8.10 -2.39 -0.02 0.72 16 22 H 0.09 0.60 8.09 -2.39 -0.02 0.58 16 23 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 24 H 0.20 1.58 8.06 -2.91 -0.02 1.55 16 25 H 0.13 4.51 8.14 -2.39 -0.02 4.49 16 26 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.00 0.12 7.20 -2.39 -0.02 0.11 16 28 H 0.06 2.51 7.57 -2.39 -0.02 2.49 16 29 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 30 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -91.47 277.11 1.70 -89.77 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: 1.07 Total: 1.62 kcal Atomic # 6 Polarization: -61.22 SS G_CDS: 3.76 Total: -57.47 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -1.63 Total: -79.35 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -2.62 Total: -44.80 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Atomic # 16 Polarization: 44.83 SS G_CDS: -0.77 Total: 44.06 kcal Total: -91.47 1.70 -89.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123426453.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.919 kcal (2) G-P(sol) polarization free energy of solvation -91.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds