Wall clock time and date at job start Sun Mar 29 2020 22:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35711 * 117.00086 * 2 1 4 4 C 1.39113 * 119.88161 * 0.02562 * 3 2 1 5 5 C 1.37605 * 120.16465 * 179.70010 * 4 3 2 6 6 C 1.39876 * 119.92298 * 0.57569 * 5 4 3 7 7 C 1.47352 * 120.11104 * 179.69864 * 6 5 4 8 8 O 1.21633 * 119.99876 * 179.72971 * 7 6 5 9 9 N 1.34777 * 119.99885 * 359.72667 * 7 6 5 10 10 C 1.36920 * 119.99583 * 179.72289 * 9 7 6 11 11 H 1.08001 * 120.00392 * 0.27716 * 10 9 7 12 12 C 1.39009 * 119.99766 * 180.27672 * 10 9 7 13 13 N 1.31394 * 120.00447 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00053 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47077 * 0.02562 * 14 12 10 16 16 H 1.48492 * 109.47205 * 120.00127 * 14 12 10 17 17 H 1.48503 * 109.47239 * 240.00199 * 14 12 10 18 18 C 1.40047 * 119.77113 * 359.42867 * 6 5 4 19 19 F 1.35101 * 120.08206 * 180.29209 * 18 6 5 20 20 C 1.38033 * 119.83234 * 0.27328 * 18 6 5 21 21 H 1.08999 * 109.47407 * 59.99510 * 1 2 3 22 22 H 1.08997 * 109.47652 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46928 * 300.00154 * 1 2 3 24 24 H 1.07999 * 119.91921 * 0.02562 * 4 3 2 25 25 H 1.08000 * 120.03621 * 180.28248 * 5 4 3 26 26 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 27 27 H 0.96999 * 120.00311 * 180.02562 * 13 12 10 28 28 H 1.07997 * 119.96617 * 180.02562 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2851 2.3743 0.0005 5 6 1.9037 3.6035 0.0068 6 6 3.3003 3.6817 0.0004 7 6 3.9670 4.9958 0.0003 8 8 5.1816 5.0614 -0.0003 9 7 3.2311 6.1248 0.0008 10 6 3.8507 7.3458 0.0065 11 1 4.9291 7.4042 0.0060 12 6 3.0916 8.5104 0.0129 13 7 1.7796 8.4395 0.0139 14 14 3.9369 10.1762 0.0199 15 1 5.4095 9.9841 0.0168 16 1 3.5353 10.9401 -1.1885 17 1 3.5380 10.9286 1.2364 18 6 4.0626 2.5069 -0.0002 19 9 5.4119 2.5752 -0.0004 20 6 3.4319 1.2791 -0.0002 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2067 2.3141 0.0014 25 1 1.3116 4.5067 0.0118 26 1 2.2625 6.0725 0.0016 27 1 1.2500 9.2521 0.0180 28 1 4.0176 0.3718 -0.0002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126860822.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:43 Heat of formation + Delta-G solvation = -116.121312 kcal Electronic energy + Delta-G solvation = -16346.354372 eV Core-core repulsion = 13276.397132 eV Total energy + Delta-G solvation = -3069.957239 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.89219 -41.24211 -40.11560 -37.87794 -36.11460 -33.52824 -32.07639 -31.11303 -28.38865 -26.99544 -24.51876 -23.46214 -21.43582 -20.28017 -19.38741 -18.36242 -17.70770 -16.98275 -16.97147 -16.77660 -16.38358 -15.86616 -15.72164 -15.49623 -15.33373 -14.56260 -13.86422 -13.62029 -13.48950 -13.31343 -13.12364 -12.96800 -12.49269 -12.12952 -11.96123 -11.94673 -11.59689 -10.53887 -10.13406 -10.01173 -9.37656 -8.57235 -6.01550 -0.21093 0.08733 1.37032 1.40919 1.55579 1.95267 2.11467 2.25825 2.64398 3.02942 3.23568 3.33791 3.61582 3.89572 4.07976 4.18397 4.28318 4.46945 4.48670 4.81225 4.84130 4.96977 5.10227 5.15868 5.33997 5.52686 5.90220 6.27834 6.48206 7.01037 7.39930 7.98068 8.60314 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.037180 B = 0.006053 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.905269 B = 4624.829517 C = 5362.583795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.176 3.824 4 C -0.205 4.205 5 C -0.028 4.028 6 C -0.205 4.205 7 C 0.465 3.535 8 O -0.634 6.634 9 N -0.550 5.550 10 C -0.337 4.337 11 H 0.080 0.920 12 C -0.007 4.007 13 N -0.908 5.908 14 Si 0.998 3.002 15 H -0.275 1.275 16 H -0.266 1.266 17 H -0.266 1.266 18 C 0.160 3.840 19 F -0.134 7.134 20 C -0.196 4.196 21 H 0.072 0.928 22 H 0.126 0.874 23 H 0.072 0.928 24 H 0.178 0.822 25 H 0.145 0.855 26 H 0.399 0.601 27 H 0.283 0.717 28 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.128 -13.633 0.001 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.231 6.231 3 C 0.128 3.872 4 C -0.223 4.223 5 C -0.047 4.047 6 C -0.210 4.210 7 C 0.255 3.745 8 O -0.523 6.523 9 N -0.185 5.185 10 C -0.467 4.467 11 H 0.098 0.902 12 C -0.208 4.208 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.200 1.200 16 H -0.191 1.191 17 H -0.191 1.191 18 C 0.139 3.861 19 F -0.112 7.112 20 C -0.215 4.215 21 H 0.090 0.910 22 H 0.144 0.856 23 H 0.090 0.910 24 H 0.195 0.805 25 H 0.163 0.837 26 H 0.235 0.765 27 H 0.093 0.907 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.386 -13.603 0.000 15.980 hybrid contribution 0.231 1.096 0.004 1.120 sum -8.155 -12.507 0.004 14.931 Atomic orbital electron populations 1.23548 0.75370 1.06310 1.03071 1.86030 1.24286 1.25310 1.87439 1.18737 0.90835 0.85318 0.92267 1.21494 1.02260 0.90130 1.08456 1.21167 0.91056 0.99540 0.92951 1.20131 0.95496 0.92214 1.13141 1.18208 0.86987 0.84785 0.84527 1.90611 1.15283 1.87847 1.58590 1.41805 1.09352 1.04563 1.62795 1.19802 0.93466 0.83320 1.50064 0.90159 1.26136 0.96132 1.03023 0.95527 1.69636 1.05104 1.31623 1.48422 0.84802 0.78036 0.76380 0.78696 1.19953 1.19099 1.19090 1.17539 0.76769 0.93186 0.98597 1.91514 1.29434 1.97173 1.93091 1.20224 0.93501 0.96431 1.11382 0.90976 0.85571 0.90985 0.80486 0.83707 0.76471 0.90682 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 15 2 O -0.32 -6.36 10.48 -90.32 -0.95 -7.31 15 3 C 0.18 4.41 6.69 22.63 0.15 4.56 15 4 C -0.21 -4.92 9.01 22.33 0.20 -4.72 15 5 C -0.03 -0.90 9.53 22.52 0.21 -0.68 15 6 C -0.21 -8.67 5.88 -20.04 -0.12 -8.79 15 7 C 0.47 25.03 7.71 86.64 0.67 25.70 15 8 O -0.63 -39.39 14.90 -4.14 -0.06 -39.45 15 9 N -0.55 -29.71 5.23 -310.04 -1.62 -31.33 15 10 C -0.34 -19.66 9.68 84.08 0.81 -18.84 15 11 H 0.08 5.03 7.15 -2.91 -0.02 5.01 15 12 C -0.01 -0.36 5.50 84.94 0.47 0.10 15 13 N -0.91 -47.83 13.05 21.67 0.28 -47.55 15 14 Si 1.00 42.57 29.55 68.60 2.03 44.60 15 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 16 H -0.27 -10.73 7.11 99.48 0.71 -10.03 15 17 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 18 C 0.16 6.30 7.28 22.66 0.16 6.46 15 19 F -0.13 -6.03 15.54 44.97 0.70 -5.33 15 20 C -0.20 -5.85 9.95 22.37 0.22 -5.63 15 21 H 0.07 0.62 7.65 -2.39 -0.02 0.61 15 22 H 0.13 0.73 8.14 -2.39 -0.02 0.71 15 23 H 0.07 0.62 7.65 -2.38 -0.02 0.61 15 24 H 0.18 2.73 6.27 -2.91 -0.02 2.71 15 25 H 0.15 4.49 6.39 -2.91 -0.02 4.47 15 26 H 0.40 19.78 5.91 -92.71 -0.55 19.23 15 27 H 0.28 13.73 8.31 -92.71 -0.77 12.96 15 28 H 0.16 4.09 8.06 -2.91 -0.02 4.07 15 Total: -1.00 -72.93 256.65 4.94 -67.99 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.67 Total: 18.99 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 3.90 Total: -0.61 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.34 Total: -78.88 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -1.01 Total: -46.76 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.70 Total: -5.33 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -72.93 4.94 -67.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126860822.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.136 kcal (2) G-P(sol) polarization free energy of solvation -72.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds