Wall clock time and date at job start Sun Mar 29 2020 22:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35965 * 116.99918 * 2 1 4 4 C 1.38295 * 119.98598 * 359.71486 * 3 2 1 5 5 C 1.39682 * 119.81102 * 179.79485 * 4 3 2 6 6 C 1.47609 * 120.10531 * 180.20950 * 5 4 3 7 7 O 1.21614 * 120.00060 * 0.29954 * 6 5 4 8 8 N 1.34775 * 120.00419 * 180.30064 * 6 5 4 9 9 C 1.36894 * 120.00549 * 180.02562 * 8 6 5 10 10 H 1.07995 * 119.99655 * 359.97438 * 9 8 6 11 11 C 1.39027 * 120.00060 * 179.97438 * 9 8 6 12 12 N 1.31375 * 120.00116 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99989 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47093 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47346 * 119.99749 * 13 11 9 16 16 H 1.48498 * 109.47274 * 240.00057 * 13 11 9 17 17 C 1.39719 * 119.79148 * 0.51032 * 5 4 3 18 18 C 1.37879 * 119.97581 * 359.72283 * 17 5 4 19 19 C 1.38548 * 120.18165 * 0.02562 * 18 17 5 20 20 F 1.35099 * 119.88878 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.47382 * 300.00462 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00569 * 1 2 3 24 24 H 1.07994 * 120.09570 * 0.03085 * 4 3 2 25 25 H 0.97001 * 119.99637 * 359.97438 * 8 6 5 26 26 H 0.97002 * 119.99784 * 180.02562 * 12 11 9 27 27 H 1.07998 * 120.01311 * 179.69944 * 17 5 4 28 28 H 1.07990 * 119.90813 * 180.02562 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2928 2.3711 -0.0060 5 6 1.9307 3.6137 -0.0016 6 6 1.1328 4.8556 -0.0032 7 8 -0.0820 4.7979 -0.0029 8 7 1.7504 6.0535 -0.0052 9 6 1.0104 7.2052 -0.0062 10 1 -0.0683 7.1539 -0.0058 11 6 1.6476 8.4409 -0.0076 12 7 2.9599 8.5032 -0.0075 13 14 0.6379 10.0125 -0.0097 14 1 -0.8076 9.6721 -0.0101 15 1 0.9590 10.8088 1.2019 16 1 0.9594 10.8058 -1.2231 17 6 3.3264 3.6776 -0.0020 18 6 4.0692 2.5159 -0.0010 19 6 3.4353 1.2839 0.0000 20 9 4.1689 0.1495 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 0.2143 2.3161 -0.0101 25 1 2.7193 6.0996 -0.0051 26 1 3.4045 9.3654 -0.0081 27 1 3.8233 4.6364 -0.0036 28 1 5.1479 2.5666 -0.0009 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129823511.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:44 Heat of formation + Delta-G solvation = -96.195932 kcal Electronic energy + Delta-G solvation = -16277.824128 eV Core-core repulsion = 13208.730918 eV Total energy + Delta-G solvation = -3069.093210 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.58343 -39.90428 -38.39477 -36.62510 -34.20265 -31.59931 -30.43180 -29.92876 -27.34010 -25.27323 -22.99283 -22.18942 -19.89516 -18.49283 -17.75792 -17.00905 -16.45126 -16.00056 -15.65775 -14.90128 -14.89587 -14.35750 -14.12448 -13.96291 -13.63693 -13.22120 -12.54980 -12.37321 -12.02980 -11.75933 -11.53046 -11.26694 -10.97911 -10.91851 -10.45968 -10.39882 -9.73401 -8.66446 -8.63453 -8.20891 -8.00785 -6.67332 -3.98993 1.08040 1.47745 3.04947 3.16366 3.22677 3.24023 3.44254 3.99846 4.33522 4.41897 4.66887 4.92733 5.13985 5.18115 5.23226 5.37957 5.40041 5.55688 5.69005 5.74434 6.19239 6.22274 6.49329 6.67051 6.77630 7.32790 7.39537 7.84958 8.38446 8.94854 9.29588 9.85436 10.49109 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.042010 B = 0.005716 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.340572 B = 4897.232360 C = 5548.428201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.088 3.912 4 C -0.142 4.142 5 C -0.062 4.062 6 C 0.460 3.540 7 O -0.598 6.598 8 N -0.536 5.536 9 C -0.293 4.293 10 H 0.110 0.890 11 C 0.024 3.976 12 N -0.885 5.885 13 Si 0.936 3.064 14 H -0.265 1.265 15 H -0.278 1.278 16 H -0.278 1.278 17 C -0.114 4.114 18 C -0.117 4.117 19 C 0.061 3.939 20 F -0.138 7.138 21 H 0.059 0.941 22 H 0.099 0.901 23 H 0.059 0.941 24 H 0.147 0.853 25 H 0.395 0.605 26 H 0.277 0.723 27 H 0.139 0.861 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 -10.277 0.006 10.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.042 3.958 4 C -0.163 4.163 5 C -0.067 4.067 6 C 0.248 3.752 7 O -0.485 6.485 8 N -0.170 5.170 9 C -0.423 4.423 10 H 0.128 0.872 11 C -0.180 4.180 12 N -0.524 5.524 13 Si 0.762 3.238 14 H -0.189 1.189 15 H -0.204 1.204 16 H -0.204 1.204 17 C -0.134 4.134 18 C -0.136 4.136 19 C 0.040 3.960 20 F -0.117 7.117 21 H 0.078 0.922 22 H 0.118 0.882 23 H 0.078 0.922 24 H 0.165 0.835 25 H 0.230 0.770 26 H 0.087 0.913 27 H 0.157 0.843 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.851 -10.319 0.005 10.354 hybrid contribution 0.146 0.789 0.001 0.803 sum 0.997 -9.530 0.006 9.582 Atomic orbital electron populations 1.23108 0.77981 1.03758 1.02109 1.86080 1.21720 1.25846 1.89156 1.18829 0.90629 0.85430 1.00929 1.21175 1.01002 0.89961 1.04123 1.20216 0.93311 0.94501 0.98623 1.17567 0.87616 0.82952 0.87016 1.90603 1.13353 1.86666 1.57902 1.41935 1.09759 1.04616 1.60667 1.19934 0.93418 0.82482 1.46476 0.87194 1.25430 0.96001 0.99991 0.96557 1.69596 1.07775 1.27330 1.47666 0.85693 0.79915 0.80202 0.77989 1.18899 1.20408 1.20413 1.21220 0.92947 0.98423 1.00768 1.20859 1.00793 0.89938 1.02041 1.17040 0.85859 0.82745 1.10361 1.91455 1.76723 1.49065 1.94460 0.92233 0.88244 0.92229 0.83505 0.77004 0.91278 0.84297 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 15 2 O -0.31 -4.79 10.36 -19.63 -0.20 -5.00 15 3 C 0.09 1.46 6.69 -39.24 -0.26 1.20 15 4 C -0.14 -2.55 8.58 -39.02 -0.33 -2.89 15 5 C -0.06 -1.23 5.87 -104.98 -0.62 -1.85 15 6 C 0.46 11.12 7.72 -12.44 -0.10 11.02 15 7 O -0.60 -16.28 15.92 5.27 0.08 -16.20 15 8 N -0.54 -13.36 5.23 -11.90 -0.06 -13.42 15 9 C -0.29 -7.88 9.68 -15.00 -0.15 -8.02 15 10 H 0.11 3.08 7.15 -52.49 -0.38 2.71 15 11 C 0.02 0.62 5.50 -17.45 -0.10 0.52 15 12 N -0.88 -22.73 13.05 55.50 0.72 -22.01 15 13 Si 0.94 19.92 29.55 -169.99 -5.02 14.89 15 14 H -0.26 -5.65 7.11 56.52 0.40 -5.25 15 15 H -0.28 -5.83 7.11 56.52 0.40 -5.42 15 16 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 17 C -0.11 -1.92 9.54 -39.16 -0.37 -2.29 15 18 C -0.12 -1.75 10.00 -39.60 -0.40 -2.14 15 19 C 0.06 0.98 7.32 -39.15 -0.29 0.69 15 20 F -0.14 -2.22 17.10 2.25 0.04 -2.18 15 21 H 0.06 0.66 7.67 -51.93 -0.40 0.26 15 22 H 0.10 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.06 0.66 7.65 -51.93 -0.40 0.26 15 24 H 0.15 2.58 5.88 -52.49 -0.31 2.28 15 25 H 0.39 9.22 5.92 -40.82 -0.24 8.98 15 26 H 0.28 6.66 8.31 -40.82 -0.34 6.32 15 27 H 0.14 2.23 6.39 -52.49 -0.34 1.89 15 28 H 0.14 1.68 8.06 -52.49 -0.42 1.26 15 LS Contribution 258.39 15.07 3.89 3.89 Total: -1.00 -30.04 258.39 -4.20 -34.24 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -2.04 Total: 8.26 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.62 Total: -2.48 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.66 Total: -35.43 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.12 Total: -21.19 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.04 -4.20 -34.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129823511.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.953 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds