Wall clock time and date at job start Sun Mar 29 2020 22:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35965 * 116.99918 * 2 1 4 4 C 1.38295 * 119.98598 * 359.71486 * 3 2 1 5 5 C 1.39682 * 119.81102 * 179.79485 * 4 3 2 6 6 C 1.47609 * 120.10531 * 180.20950 * 5 4 3 7 7 O 1.21614 * 120.00060 * 0.29954 * 6 5 4 8 8 N 1.34775 * 120.00419 * 180.30064 * 6 5 4 9 9 C 1.36894 * 120.00549 * 180.02562 * 8 6 5 10 10 H 1.07995 * 119.99655 * 359.97438 * 9 8 6 11 11 C 1.39027 * 120.00060 * 179.97438 * 9 8 6 12 12 N 1.31375 * 120.00116 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99989 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47093 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47346 * 119.99749 * 13 11 9 16 16 H 1.48498 * 109.47274 * 240.00057 * 13 11 9 17 17 C 1.39719 * 119.79148 * 0.51032 * 5 4 3 18 18 C 1.37879 * 119.97581 * 359.72283 * 17 5 4 19 19 C 1.38548 * 120.18165 * 0.02562 * 18 17 5 20 20 F 1.35099 * 119.88878 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.47382 * 300.00462 * 1 2 3 22 22 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46926 * 60.00569 * 1 2 3 24 24 H 1.07994 * 120.09570 * 0.03085 * 4 3 2 25 25 H 0.97001 * 119.99637 * 359.97438 * 8 6 5 26 26 H 0.97002 * 119.99784 * 180.02562 * 12 11 9 27 27 H 1.07998 * 120.01311 * 179.69944 * 17 5 4 28 28 H 1.07990 * 119.90813 * 180.02562 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2928 2.3711 -0.0060 5 6 1.9307 3.6137 -0.0016 6 6 1.1328 4.8556 -0.0032 7 8 -0.0820 4.7979 -0.0029 8 7 1.7504 6.0535 -0.0052 9 6 1.0104 7.2052 -0.0062 10 1 -0.0683 7.1539 -0.0058 11 6 1.6476 8.4409 -0.0076 12 7 2.9599 8.5032 -0.0075 13 14 0.6379 10.0125 -0.0097 14 1 -0.8076 9.6721 -0.0101 15 1 0.9590 10.8088 1.2019 16 1 0.9594 10.8058 -1.2231 17 6 3.3264 3.6776 -0.0020 18 6 4.0692 2.5159 -0.0010 19 6 3.4353 1.2839 0.0000 20 9 4.1689 0.1495 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8901 24 1 0.2143 2.3161 -0.0101 25 1 2.7193 6.0996 -0.0051 26 1 3.4045 9.3654 -0.0081 27 1 3.8233 4.6364 -0.0036 28 1 5.1479 2.5666 -0.0009 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129823511.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:44 Heat of formation + Delta-G solvation = -116.218222 kcal Electronic energy + Delta-G solvation = -16278.692360 eV Core-core repulsion = 13208.730918 eV Total energy + Delta-G solvation = -3069.961442 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.88605 -41.29627 -40.03640 -38.06724 -36.16238 -33.51042 -31.85899 -31.27679 -28.47895 -27.07590 -24.54692 -23.47319 -21.54113 -20.32037 -19.28815 -18.40241 -17.80931 -17.21232 -17.20795 -16.77855 -16.08594 -15.83870 -15.57305 -15.52814 -15.23379 -14.91761 -13.91661 -13.78854 -13.57604 -13.32457 -12.95433 -12.69172 -12.45211 -12.25038 -12.13979 -12.11510 -11.61685 -10.60010 -10.16922 -10.01253 -9.34476 -8.59084 -6.02944 -0.34763 0.16373 1.37350 1.42704 1.56833 1.88477 2.10430 2.25054 2.65506 2.95843 3.10325 3.24012 3.65933 3.96480 4.03967 4.10252 4.33116 4.36798 4.47281 4.68082 4.79308 4.83665 5.06968 5.26492 5.33212 5.50675 5.89317 6.15916 6.45531 6.98817 7.38045 7.94605 8.57866 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.042010 B = 0.005716 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.340572 B = 4897.232360 C = 5548.428201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.322 6.322 3 C 0.089 3.911 4 C -0.143 4.143 5 C -0.088 4.088 6 C 0.460 3.540 7 O -0.636 6.636 8 N -0.544 5.544 9 C -0.336 4.336 10 H 0.086 0.914 11 C -0.006 4.006 12 N -0.905 5.905 13 Si 0.999 3.001 14 H -0.272 1.272 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.106 4.106 18 C -0.100 4.100 19 C 0.066 3.934 20 F -0.134 7.134 21 H 0.060 0.940 22 H 0.134 0.866 23 H 0.060 0.940 24 H 0.144 0.856 25 H 0.400 0.600 26 H 0.284 0.716 27 H 0.147 0.853 28 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.568 -11.055 0.007 11.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.042 3.958 4 C -0.163 4.163 5 C -0.091 4.091 6 C 0.250 3.750 7 O -0.526 6.526 8 N -0.178 5.178 9 C -0.466 4.466 10 H 0.104 0.896 11 C -0.208 4.208 12 N -0.544 5.544 13 Si 0.822 3.178 14 H -0.196 1.196 15 H -0.193 1.193 16 H -0.193 1.193 17 C -0.126 4.126 18 C -0.118 4.118 19 C 0.046 3.954 20 F -0.112 7.112 21 H 0.078 0.922 22 H 0.152 0.848 23 H 0.079 0.921 24 H 0.161 0.839 25 H 0.236 0.764 26 H 0.094 0.906 27 H 0.164 0.836 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.029 -11.120 0.006 11.304 hybrid contribution -0.186 0.788 0.001 0.809 sum 1.843 -10.332 0.006 10.495 Atomic orbital electron populations 1.23420 0.75995 1.06092 1.02210 1.86087 1.23745 1.24933 1.88811 1.18862 0.91037 0.85474 1.00386 1.21128 1.01074 0.89939 1.04208 1.19936 0.94328 0.92887 1.01978 1.18269 0.87551 0.84098 0.85122 1.90555 1.15348 1.87566 1.59142 1.41899 1.09881 1.04522 1.61491 1.19855 0.92745 0.84053 1.49906 0.89634 1.26182 0.97113 1.02187 0.95341 1.69636 1.08614 1.28437 1.47672 0.84785 0.77977 0.76480 0.78604 1.19609 1.19251 1.19261 1.21282 0.91674 0.99687 0.99941 1.21155 1.02510 0.88372 0.99767 1.17254 0.85784 0.83289 1.09106 1.91476 1.76512 1.48952 1.94279 0.92154 0.84842 0.92145 0.83865 0.76358 0.90583 0.83582 0.80114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 15 2 O -0.32 -9.18 10.36 -93.16 -0.96 -10.14 15 3 C 0.09 2.80 6.69 22.49 0.15 2.95 15 4 C -0.14 -5.08 8.58 22.63 0.19 -4.89 15 5 C -0.09 -3.45 5.87 -20.10 -0.12 -3.56 15 6 C 0.46 22.90 7.72 86.72 0.67 23.57 15 7 O -0.64 -36.07 15.92 -4.08 -0.06 -36.13 15 8 N -0.54 -27.87 5.23 -309.83 -1.62 -29.49 15 9 C -0.34 -18.65 9.68 84.09 0.81 -17.84 15 10 H 0.09 5.05 7.15 -2.91 -0.02 5.03 15 11 C -0.01 -0.31 5.50 84.95 0.47 0.15 15 12 N -0.90 -46.37 13.05 21.68 0.28 -46.09 15 13 Si 1.00 40.90 29.55 68.60 2.03 42.92 15 14 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 15 H -0.27 -10.43 7.11 99.48 0.71 -9.73 15 16 H -0.27 -10.44 7.11 99.48 0.71 -9.73 15 17 C -0.11 -3.41 9.54 22.54 0.21 -3.20 15 18 C -0.10 -2.64 10.00 22.26 0.22 -2.42 15 19 C 0.07 1.95 7.32 22.55 0.16 2.11 15 20 F -0.13 -3.85 17.10 44.97 0.77 -3.08 15 21 H 0.06 1.26 7.67 -2.39 -0.02 1.24 15 22 H 0.13 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.06 1.26 7.65 -2.38 -0.02 1.25 15 24 H 0.14 5.11 5.88 -2.91 -0.02 5.09 15 25 H 0.40 19.04 5.92 -92.71 -0.55 18.49 15 26 H 0.28 13.46 8.31 -92.71 -0.77 12.69 15 27 H 0.15 4.48 6.39 -2.91 -0.02 4.46 15 28 H 0.18 3.41 8.06 -2.92 -0.02 3.39 15 Total: -1.00 -65.23 258.39 4.99 -60.25 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.67 Total: 23.42 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 3.89 Total: -1.66 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -1.34 Total: -75.58 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -1.03 Total: -46.27 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.77 Total: -3.08 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Total: -65.23 4.99 -60.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129823511.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.971 kcal (2) G-P(sol) polarization free energy of solvation -65.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds