Wall clock time and date at job start Sun Mar 29 2020 22:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39926 * 120.46552 * 2 1 4 4 N 1.31701 * 119.82874 * 180.02562 * 3 2 1 5 5 C 1.33468 * 120.83640 * 0.02562 * 4 3 2 6 6 S 1.71198 * 119.51602 * 179.97438 * 5 4 3 7 7 N 1.34617 * 120.96992 * 359.97438 * 5 4 3 8 8 C 1.46496 * 119.94044 * 179.97438 * 7 5 4 9 9 N 1.46503 * 109.47650 * 285.00588 * 8 7 5 10 10 C 1.46495 * 119.99943 * 89.99422 * 9 8 7 11 11 C 1.36940 * 119.99518 * 269.72548 * 9 8 7 12 12 H 1.08004 * 119.99689 * 332.99889 * 11 9 8 13 13 C 1.38807 * 119.99917 * 153.00477 * 11 9 8 14 14 N 1.31625 * 119.99807 * 345.76163 * 13 11 9 15 15 Si 1.86798 * 120.00061 * 165.76536 * 13 11 9 16 16 H 1.48492 * 109.47336 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47128 * 119.99696 * 15 13 11 18 18 H 1.48500 * 109.47093 * 239.99463 * 15 13 11 19 19 C 1.35939 * 120.12180 * 0.28207 * 7 5 4 20 20 H 1.09004 * 109.47004 * 90.00186 * 1 2 3 21 21 H 1.08998 * 109.46924 * 209.99816 * 1 2 3 22 22 H 1.08998 * 109.46640 * 330.00136 * 1 2 3 23 23 H 1.08000 * 120.08119 * 0.03844 * 3 2 1 24 24 H 1.09004 * 109.47242 * 164.99643 * 8 7 5 25 25 H 1.09003 * 109.46703 * 45.00233 * 8 7 5 26 26 H 1.08998 * 109.47053 * 269.99794 * 10 9 8 27 27 H 1.08999 * 109.46922 * 29.99852 * 10 9 8 28 28 H 1.09001 * 109.47060 * 149.99742 * 10 9 8 29 29 H 0.96996 * 119.99620 * 180.02562 * 14 13 11 30 30 H 1.08002 * 120.41347 * 179.72449 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.2061 0.0000 4 7 3.5334 1.1914 -0.0005 5 6 4.2048 0.0379 -0.0015 6 16 5.9166 0.0583 -0.0028 7 7 3.5556 -1.1414 -0.0016 8 6 4.3151 -2.3941 -0.0033 9 7 4.8726 -2.6255 -1.3382 10 6 6.1996 -2.1059 -1.6779 11 6 4.1556 -3.3322 -2.2665 12 1 3.4329 -4.0675 -1.9450 13 6 4.3578 -3.1035 -3.6206 14 7 5.0155 -2.0342 -4.0164 15 14 3.6965 -4.3131 -4.8811 16 1 3.0001 -5.4237 -4.1835 17 1 2.7419 -3.6175 -5.7813 18 1 4.8222 -4.8598 -5.6806 19 6 2.1966 -1.1720 -0.0063 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3632 0.8900 0.5138 23 1 1.6854 2.1465 0.0006 24 1 3.6550 -3.2196 0.2630 25 1 5.1257 -2.3285 0.7226 26 1 6.1017 -1.1025 -2.0921 27 1 6.8164 -2.0699 -0.7800 28 1 6.6678 -2.7590 -2.4144 29 1 5.1565 -1.8742 -4.9626 30 1 1.6710 -2.1155 -0.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131980935.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:12 Heat of formation + Delta-G solvation = 85.522649 kcal Electronic energy + Delta-G solvation = -15281.275852 eV Core-core repulsion = 12818.568478 eV Total energy + Delta-G solvation = -2462.707374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.98395 -36.44908 -34.22085 -33.66389 -31.27101 -27.71010 -26.86821 -26.04439 -24.33879 -23.05735 -21.35039 -18.03030 -17.85335 -16.89047 -16.19396 -15.59306 -14.68315 -14.53342 -13.76181 -13.68735 -13.56364 -12.87980 -12.72479 -12.37892 -12.03038 -11.64859 -11.25952 -11.03946 -10.76101 -10.60865 -10.43617 -10.14109 -10.11092 -9.62951 -9.57913 -8.86400 -7.34122 -6.70009 -6.27576 -6.07843 -3.62244 0.76644 1.27108 2.68110 3.15043 3.23337 3.26437 3.32075 3.65383 4.19089 4.50650 4.63005 4.84871 4.97554 5.11646 5.28877 5.38663 5.55158 5.58027 5.80201 5.99057 5.99249 6.10420 6.76564 6.91158 7.07662 7.38909 7.51590 7.98750 8.03217 8.07091 8.83542 9.41897 9.94242 10.90347 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.010286 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.462244 B = 2721.402237 C = 3463.484375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.239 4.239 3 C 0.207 3.793 4 N -0.494 5.494 5 C 0.444 3.556 6 S -0.589 6.589 7 N -0.435 5.435 8 C 0.301 3.699 9 N -0.546 5.546 10 C 0.159 3.841 11 C -0.293 4.293 12 H 0.075 0.925 13 C 0.021 3.979 14 N -0.867 5.867 15 Si 0.911 3.089 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.283 1.283 19 C 0.171 3.829 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.168 0.832 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.053 0.947 27 H 0.029 0.971 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.204 0.006 7.406 13.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.252 4.252 3 C 0.022 3.978 4 N -0.210 5.210 5 C 0.091 3.909 6 S -0.444 6.444 7 N -0.127 5.127 8 C 0.092 3.908 9 N -0.261 5.261 10 C 0.015 3.985 11 C -0.423 4.423 12 H 0.093 0.907 13 C -0.183 4.183 14 N -0.505 5.505 15 Si 0.739 3.261 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.209 1.209 19 C 0.024 3.976 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.185 0.815 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.890 0.485 7.166 11.429 hybrid contribution -1.958 -1.055 -1.073 2.470 sum -10.849 -0.570 6.093 12.456 Atomic orbital electron populations 1.20469 0.88886 1.02833 1.02536 1.20412 0.98540 0.93216 1.13072 1.23790 0.90718 0.98040 0.85296 1.69987 1.08092 1.25533 1.17353 1.23764 0.99218 0.81871 0.86072 1.92627 0.90134 1.94494 1.67171 1.49950 1.05744 1.12232 1.44740 1.22929 0.93823 0.81821 0.92209 1.44905 1.14921 1.56443 1.09873 1.21324 0.82405 0.98614 0.96126 1.19367 1.22503 1.14091 0.86323 0.90735 1.25364 0.98562 0.96355 0.98063 1.70157 1.40663 1.24125 1.15576 0.86113 0.78519 0.80334 0.81095 1.19768 1.21261 1.20869 1.22945 0.85314 1.00353 0.89032 0.91200 0.91506 0.91226 0.81460 0.89713 0.88351 0.92821 0.95201 0.94942 0.92822 0.81083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 10.04 36.01 0.36 -0.38 16 2 C -0.24 -3.07 5.87 -104.80 -0.62 -3.69 16 3 C 0.21 3.05 11.00 -16.98 -0.19 2.86 16 4 N -0.49 -10.03 10.39 -13.80 -0.14 -10.17 16 5 C 0.44 9.92 7.61 -88.22 -0.67 9.25 16 6 S -0.59 -15.01 24.08 -107.50 -2.59 -17.60 16 7 N -0.44 -8.39 2.83 -121.82 -0.35 -8.73 16 8 C 0.30 5.92 5.82 -63.75 -0.37 5.54 16 9 N -0.55 -13.32 3.10 -184.86 -0.57 -13.89 16 10 C 0.16 4.18 7.01 59.84 0.42 4.60 16 11 C -0.29 -7.41 9.59 -15.06 -0.14 -7.56 16 12 H 0.07 1.76 7.87 -52.48 -0.41 1.35 16 13 C 0.02 0.56 5.02 -17.43 -0.09 0.47 16 14 N -0.87 -24.86 11.09 55.49 0.62 -24.24 16 15 Si 0.91 20.32 29.58 -169.99 -5.03 15.29 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.17 2.52 10.07 -16.54 -0.17 2.36 16 20 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 22 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 23 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 24 H 0.08 1.37 7.74 -51.93 -0.40 0.97 16 25 H 0.10 1.95 7.03 -51.93 -0.36 1.59 16 26 H 0.05 1.59 6.13 -51.88 -0.32 1.27 16 27 H 0.03 0.74 6.63 -51.93 -0.34 0.40 16 28 H 0.03 0.89 7.31 -51.93 -0.38 0.51 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.17 1.91 7.94 -52.49 -0.42 1.49 16 LS Contribution 265.78 15.07 4.01 4.01 Total: -1.00 -34.37 265.78 -8.98 -43.34 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -3.46 Total: -1.47 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -1.46 Total: 13.46 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.45 Total: -57.03 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Atomic # 16 Polarization: -15.01 SS G_CDS: -2.59 Total: -17.60 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.37 -8.98 -43.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131980935.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.868 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds